Name: Magnetospirillum magnetotacticum MS-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13943

Type strain:

Species: Magnetospirillum magnetotacticum

Strain Designation: MS-1

Culture col. no.: DSM 3856, ATCC 31632, IFO 15272, NBRC 15272, JCM 21281, IAM 14723, LMG 10894, LMG 5965, LMG 6118, NCIMB 12542

Strain history: IAM 14723 <-- IFO 15272 <-- DSM 3856 <-- ATCC 31632 <-- R. P. Blakemore MS-1.

NCBI tax ID(s): 188 (species)

SI-ID 3553

LMG 10894, ATCC 31632, DSM 3856, LMG 5965, LMG 6118, NCIMB 12542, IFO 15272, IAM 14723, NBRC 15272, BCRC 17317, CCRC 17317, JCM 21281

Special Collections

DSMZ
JCM

Section

Magnetospirillum magnetotacticum MS-1 is a microaerophile, Gram-negative bacterium that was isolated from freshwater sediment.

Gram-negative
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Magnetospirillum*
	Species	**Magnetospirillum magnetotacticum**
	Full Scientific Name (LPSN)	Magnetospirillum magnetotacticum (Maratea and Blakemore 1981) Schleifer et al. 1992

	Synonym	Paramagnetospirillum magnetotacticum
	Synonym	Aquaspirillum magnetotacticum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %90.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1484]

Culture medium

MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)

[Ref.: #1484]

Culture medium growth

[Ref.: #1484]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1484]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1484]			growth	30 °C
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1484]

Oxygen tolerance

microaerophile

[Ref.: #1484]

Name of produced compound

iron reductase

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1484]	Sample type/isolated from	freshwater sediment
[Ref.: #1484]	Geographic location (country and/or sea, region)	Massachusetts, Woods Hole, Cedar swamp
[Ref.: #1484]	Country	USA
[Ref.: #1484]	Country ISO 3 Code	USA
[Ref.: #1484]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Freshwater swamp
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y10110 (>99% sequence identity) for Magnetospirillum from Microbeatlas

Aquatic Samples	6745
Soil Samples	1907
Animal Samples	813
Plant Samples	1062
Total Samples	10527

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1484]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1484]	M.magnetotacticum SSU rRNA gene, partial	Y10110	1443	GenBank ENA	188 tax ID
[Ref.: #20218]	Magnetospirillum magnetotacticum gene for 16S rRNA, partial sequence, strain: NBRC 15272	AB680822	1409	GenBank ENA	188 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Magnetospirillum magnetotacticum MS-1	GCA_000829825	contig	GenBank ENA	272627 tax ID	*
[Ref.: #66792]	Magnetospirillum magnetotacticum MS-1	272627.4	wgs	PATRIC	272627 tax ID	*
[Ref.: #66792]	Magnetospirillum magnetotacticum MS-1	2645727833	draft	JGI IMG/M	272627 tax ID	*

[Ref.: #1484]

GC-content

64.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Magnetospirillum magnetotacticum MS-1 PATRIC: 272627.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	90.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.434	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.302	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	54.321	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.42	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.46	no

Availability in culture collections External links

[Ref.: #1484]

Culture collection no.

DSM 3856, ATCC 31632, IFO 15272, NBRC 15272, JCM 21281, IAM 14723, LMG 10894, LMG 5965, LMG 6118, NCIMB 12542

[Ref.: #83116]

SI-ID 3553

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	MS-1 magA: Revisiting Its Efficacy as a Reporter Gene for MRI.	Pereira SM, Williams SR, Murray P, Taylor A	Mol Imaging	10.1177/1536012116641533	2016	*
Phylogeny	Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia.	Dziuba M, Koziaeva V, Grouzdev D, Burganskaya E, Baslerov R, Kolganova T, Chernyadyev A, Osipov G, Andrianova E, Gorlenko V, Kuznetsov B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000994	2016	*
Metabolism	Magnetic properties of magnetite synthesized by Magnetospirillum magnetotacticum MS-1 cultured with different concentrations of ferric iron.	Yiriletu, Iwasa T	Biotechnol Lett	10.1007/s10529-015-1928-8	2015	*
Pathogenicity	Effect of Polyethylene Glycol on the Formation of Magnetic Nanoparticles Synthesized by Magnetospirillum magnetotacticum MS-1.	Shimoshige H, Kobayashi H, Mizuki T, Nagaoka Y, Inoue A, Maekawa T	PLoS One	10.1371/journal.pone.0127481	2015	*
Genetics	Genome Sequence of Magnetospirillum magnetotacticum Strain MS-1.	Smalley MD, Marinov GK, Bertani LE, DeSalvo G	Genome Announc	10.1128/genomeA.00233-15	2015	*
Biotechnology	Biological colloid engineering: Self-assembly of dipolar ferromagnetic chains in a functionalized biogenic ferrofluid.	Ruder WC, Hsu CP, Edelman BD Jr, Schwartz R, Leduc PR	Appl Phys Lett	10.1063/1.4742329	2012	*
Biotechnology	Enhancement of magnetotactic bacterial yield in a modified MSGM medium without alteration of magnetosomes properties.	Kundu S, Kulkarni GR	Indian J Exp Biol		2010	*
Metabolism	On the change in bacterial size and magnetosome features for Magnetospirillum magnetotacticum (MS-1) under high concentrations of zinc and nickel.	Kundu S, Kale AA, Banpurkar AG, Kulkarni GR, Ogale SB	Biomaterials	10.1016/j.biomaterials.2009.04.039	2009	*
Metabolism	Identification of iron transporters expressed in the magnetotactic bacterium Magnetospirillum magnetotacticum.	Taoka A, Umeyama C, Fukumori Y	Curr Microbiol	10.1007/s00284-008-9305-7	2008	*
Genetics	Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function.	Richter M, Kube M, Bazylinski DA, Lombardot T, Glockner FO, Reinhardt R, Schuler D	J Bacteriol	10.1128/JB.00119-07	2007	*
Enzymology	Nitrate reductase from the magnetotactic bacterium Magnetospirillum magnetotacticum MS-1: purification and sequence analyses.	Taoka A, Yoshimatsu K, Kanemori M, Fukumori Y	Can J Microbiol	10.1139/w03-028	2003	*
Genetics	Physical and genetic characterization of the genome of Magnetospirillum magnetotacticum, strain MS-1.	Bertani LE, Weko J, Phillips KV, Gray RF, Kirschvink JL	Gene	10.1016/s0378-1119(01)00331-6	2001	*
Enzymology	Iron reductase for magnetite synthesis in the magnetotactic bacterium Magnetospirillum magnetotacticum.	Noguchi Y, Fujiwara T, Yoshimatsu K, Fukumori Y	J Bacteriol	10.1128/JB.181.7.2142-2147.1999	1999	*
Enzymology	Purification, and some molecular and enzymatic features of a novel ccb-type cytochrome c oxidase from a microaerobic denitrifier, Magnetospirillum magnetotacticum.	Tamegai H, Fukumori Y	FEBS Lett	10.1016/0014-5793(94)00500-1	1994	*
Enzymology	Purification and properties of a 'cytochrome a1'-like hemoprotein from a magnetotactic bacterium, Aquaspirillum magnetotacticum.	Tamegai H, Yamanaka T, Fukumori Y	Biochim Biophys Acta	10.1016/0304-4165(93)90020-9	1993	*
Phylogeny	Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic analysis of 16S rDNA sequences.	Burgess JG, Kawaguchi R, Sakaguchi T, Thornhill RH, Matsunaga T	J Bacteriol	10.1128/jb.175.20.6689-6694.1993	1993	*
Enzymology	Gene transfer in magnetic bacteria: transposon mutagenesis and cloning of genomic DNA fragments required for magnetosome synthesis.	Matsunaga T, Nakamura C, Burgess JG, Sode K	J Bacteriol	10.1128/jb.174.9.2748-2753.1992	1992	*
Enzymology	Cloning of a sequence of Aquaspirillum magnetotacticum that complements the aroD gene of Escherichia coli.	Berson AE, Hudson DV, Waleh NS	Mol Microbiol	10.1111/j.1365-2958.1991.tb02156.x	1991	*
Enzymology	Periplasmic superoxide dismutases in Aquaspirillum magnetotacticum.	Short KA, Blakemore RP	Arch Microbiol	10.1007/BF00425171	1989	*
Enzymology	Iron respiration-driven proton translocation in aerobic bacteria.	Short KA, Blakemore RP	J Bacteriol	10.1128/jb.167.2.729-731.1986	1986	*
Metabolism	Hydroxamate production by Aquaspirillum magnetotacticum.	Paoletti LC, Blakemore RP	J Bacteriol	10.1128/jb.167.1.73-76.1986	1986	*
	Denitrification and Assimilatory Nitrate Reduction in Aquaspirillum magnetotacticum.	Bazylinski DA, Blakemore RP	Appl Environ Microbiol	10.1128/aem.46.5.1118-1124.1983	1983	*

References

#1484

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3856

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83116

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3553.1 )

* These data were automatically processed and therefore are not curated

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