Strain identifier

BacDive ID: 13943

Type strain: Yes

Species: Magnetospirillum magnetotacticum

Strain Designation: MS-1

Strain history: IAM 14723 <-- IFO 15272 <-- DSM 3856 <-- ATCC 31632 <-- R. P. Blakemore MS-1.

NCBI tax ID(s): 188 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1484

BacDive-ID: 13943

DSM-Number: 3856

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Magnetospirillum magnetotacticum MS-1 is a microaerophile, mesophilic bacterium that was isolated from freshwater sediment.

NCBI tax id

  • NCBI tax id: 188
  • Matching level: species

strain history

@refhistory
1484<- ATCC <- R. P. Blakemore, University of New Hampshire, Department of Microbiology, Durham, New Hampshire, USA; MS-1
67770IAM 14723 <-- IFO 15272 <-- DSM 3856 <-- ATCC 31632 <-- R. P. Blakemore MS-1.

doi: 10.13145/bacdive13943.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Rhodospirillaceae
  • genus: Magnetospirillum
  • species: Magnetospirillum magnetotacticum
  • full scientific name: Magnetospirillum magnetotacticum (Maratea and Blakemore 1981) Schleifer et al. 1992
  • synonyms

    @refsynonym
    20215Paramagnetospirillum magnetotacticum
    20215Aquaspirillum magnetotacticum

@ref: 1484

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Magnetospirillum

species: Magnetospirillum magnetotacticum

full scientific name: Magnetospirillum magnetotacticum (Maratea and Blakemore 1981) Schleifer et al. 1992

strain designation: MS-1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1484
  • name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/380
  • composition: Name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380) Composition: Agar 1.3 g/l (optional) KH2PO4 0.68 g/l L(+)-Tartaric acid 0.37 g/l Succinic acid 0.37 g/l NaNO3 0.12 g/l Yeast extract 0.1 g/l Na-thioglycolate 0.05 g/l Na-acetate 0.05 g/l MgSO4 x 7 H2O 0.015 g/l FeCl3 x 6 H2O 0.009 g/l Nitrilotriacetic acid 0.0075 g/l NaCl 0.005 g/l Quinic acid 0.0038 g/l MnSO4 x H2O 0.0025 g/l CoSO4 x 7 H2O 0.0009 g/l ZnSO4 x 7 H2O 0.0009 g/l FeSO4 x 7 H2O 0.0005 g/l Sodium resazurin 0.0005 g/l CaCl2 x 2 H2O 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Nicotinic acid 0.0002 g/l NiCl2 x 6 H2O 0.00015 g/l AlK(SO4)2 x 12 H2O 0.0001 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l CuSO4 x 5 H2O 5e-05 g/l Na2MoO4 x 2 H2O 5e-05 g/l H3BO3 5e-05 g/l D-(+)-biotin 2e-05 g/l Na2WO4 x 2 H2O 2e-06 g/l Na2SeO3 x 5 H2O 1.5e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1484positivegrowth30mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1484
  • oxygen tolerance: microaerophile

compound production

  • @ref: 1484
  • compound: iron reductase

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1484freshwater sedimentMassachusetts, Woods Hole, Cedar swampUSAUSANorth America
67770Freshwater swamp

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_1353.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_782;97_911;98_1068;99_1353&stattab=map
  • Last taxonomy: Magnetospirillum
  • 16S sequence: Y10110
  • Sequence Identity:
  • Total samples: 10527
  • soil counts: 1907
  • aquatic counts: 6745
  • animal counts: 813
  • plant counts: 1062

Safety information

risk assessment

  • @ref: 1484
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Magnetospirillum magnetotacticum gene for 16S rRNA, partial sequence, strain: NBRC 15272AB6808221409ena188
1484M.magnetotacticum SSU rRNA gene, partialY101101443ena188

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Magnetospirillum magnetotacticum MS-1GCA_000829825contigncbi272627
66792Magnetospirillum magnetotacticum MS-1272627.4wgspatric272627
66792Magnetospirillum magnetotacticum MS-12645727833draftimg272627

GC content

  • @ref: 1484
  • GC-content: 64.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes83.826no
gram-positiveno97.95no
anaerobicno94.321yes
halophileno96.009no
spore-formingno89.913no
glucose-utilyes84.203no
aerobicno61.151no
thermophileno99.691no
flagellatedyes57.46no
glucose-fermentno87.563no

External links

@ref: 1484

culture collection no.: DSM 3856, ATCC 31632, IFO 15272, NBRC 15272, JCM 21281, IAM 14723, LMG 10894, LMG 5965, LMG 6118, NCIMB 12542

straininfo link

  • @ref: 83116
  • straininfo: 3553

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology1314800Gene transfer in magnetic bacteria: transposon mutagenesis and cloning of genomic DNA fragments required for magnetosome synthesis.Matsunaga T, Nakamura C, Burgess JG, Sode KJ Bacteriol10.1128/jb.174.9.2748-2753.19921992Cloning, Molecular, Conjugation, Genetic, DNA Transposable Elements, Escherichia coli/genetics, Ferrosoferric Oxide, Genetic Vectors, Iron/*metabolism, Mutagenesis, Insertional, Oxides/*metabolism, Plasmids/genetics, Restriction Mapping, Spirillum/*genetics, TransfectionMetabolism
Enzymology1766390Cloning of a sequence of Aquaspirillum magnetotacticum that complements the aroD gene of Escherichia coli.Berson AE, Hudson DV, Waleh NSMol Microbiol10.1111/j.1365-2958.1991.tb02156.x1991Cloning, Molecular, Cosmids/genetics, Cytoplasmic Granules, Escherichia coli/*genetics, Ferric Compounds/*metabolism, Gene Library, Genetic Complementation Test, Gram-Negative Bacteria/*genetics, Hydro-Lyases/*genetics, Magnetics, Restriction MappingMetabolism
Enzymology2684080Periplasmic superoxide dismutases in Aquaspirillum magnetotacticum.Short KA, Blakemore RPArch Microbiol10.1007/BF004251711989Catalase/metabolism, Electrophoresis, Polyacrylamide Gel, Escherichia coli/enzymology, Kinetics, Molecular Weight, Peroxidases/metabolism, Species Specificity, Spirillum/*enzymology, Superoxide Dismutase/isolation & purification/*metabolismMetabolism
Metabolism2941414Hydroxamate production by Aquaspirillum magnetotacticum.Paoletti LC, Blakemore RPJ Bacteriol10.1128/jb.167.1.73-76.19861986Bacteria/*metabolism, Bacterial Outer Membrane Proteins/biosynthesis, Ferric Compounds/metabolism/pharmacology, Hydroxamic Acids/*biosynthesis/pharmacology, Iron Chelating Agents/biosynthesis, Molecular Weight, Quinic Acid/metabolism/pharmacology, Salmonella typhimurium/growth & development, SiderophoresBiotechnology
Enzymology3015890Iron respiration-driven proton translocation in aerobic bacteria.Short KA, Blakemore RPJ Bacteriol10.1128/jb.167.2.729-731.19861986Aerobiosis, Bacillus subtilis/*physiology, *Bacterial Physiological Phenomena, Biological Transport, Escherichia coli/*physiology, Iron/*physiology, Nitrate Reductase, Nitrate Reductases/metabolism, Oxidation-Reduction, ProtonsMetabolism
Phylogeny7691800Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic analysis of 16S rDNA sequences.Burgess JG, Kawaguchi R, Sakaguchi T, Thornhill RH, Matsunaga TJ Bacteriol10.1128/jb.175.20.6689-6694.19931993Bacteria/*genetics, Base Sequence, Biological Evolution, DNA Primers/chemistry, DNA, Ribosomal/*genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Sequence AlignmentGenetics
Enzymology8013655Purification, and some molecular and enzymatic features of a novel ccb-type cytochrome c oxidase from a microaerobic denitrifier, Magnetospirillum magnetotacticum.Tamegai H, Fukumori YFEBS Lett10.1016/0014-5793(94)00500-11994Bacteria/*enzymology, Cell Fractionation, Cytochrome c Group/metabolism, Electron Transport Complex IV/classification/isolation & purification/*metabolism, Heme/analysis, Iron/analysis, Magnetics, Oxidation-Reduction, Protein Conformation, SpectrophotometryMetabolism
Enzymology8251522Purification and properties of a 'cytochrome a1'-like hemoprotein from a magnetotactic bacterium, Aquaspirillum magnetotacticum.Tamegai H, Yamanaka T, Fukumori YBiochim Biophys Acta10.1016/0304-4165(93)90020-91993Cytochrome a Group/chemistry/*isolation & purification, Cytochromes a1, Heme/chemistry/*isolation & purification, Magnetics, Spectrophotometry, Ultraviolet, Spirillum/*chemistryPhylogeny
Enzymology10094692Iron reductase for magnetite synthesis in the magnetotactic bacterium Magnetospirillum magnetotacticum.Noguchi Y, Fujiwara T, Yoshimatsu K, Fukumori YJ Bacteriol10.1128/JB.181.7.2142-2147.19991999*FMN Reductase, Ferric Compounds/metabolism, Ferrosoferric Oxide, Iron/*metabolism, NADH, NADPH Oxidoreductases/isolation & purification/*metabolism, Oxides/*metabolism, Rhodospirillaceae/*enzymologyMetabolism
Genetics11250081Physical and genetic characterization of the genome of Magnetospirillum magnetotacticum, strain MS-1.Bertani LE, Weko J, Phillips KV, Gray RF, Kirschvink JLGene10.1016/s0378-1119(01)00331-62001Amino Acid Sequence, *Bacterial Proteins, Base Sequence, Carrier Proteins/genetics, *Cation Transport Proteins, Cytochrome b Group/genetics, DNA, Bacterial/chemistry/genetics, DNA, Circular/genetics, Electrophoresis, Gel, Pulsed-Field, Ferritins/genetics, Gene Order, *Genome, Bacterial, Membrane Proteins/genetics, Molecular Sequence Data, Protein Subunits, Restriction Mapping, Rhodospirillaceae/*genetics, Sequence Analysis, DNAEnzymology
Enzymology12795406Nitrate reductase from the magnetotactic bacterium Magnetospirillum magnetotacticum MS-1: purification and sequence analyses.Taoka A, Yoshimatsu K, Kanemori M, Fukumori YCan J Microbiol10.1139/w03-0282003Amino Acid Sequence, Base Sequence, Cloning, Molecular, Culture Media, Ferrosoferric Oxide, Iron/chemistry/metabolism, Models, Genetic, Molecular Sequence Data, Molybdenum/metabolism, Nitrate Reductase, Nitrate Reductases/*genetics/isolation & purification, Operon/genetics, Oxides/chemistry, Phylogeny, Rhodospirillaceae/*enzymology/genetics, Sequence Alignment, Sequence AnalysisTranscriptome
16346418Denitrification and Assimilatory Nitrate Reduction in Aquaspirillum magnetotacticum.Bazylinski DA, Blakemore RPAppl Environ Microbiol10.1128/aem.46.5.1118-1124.19831983
Genetics17449609Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function.Richter M, Kube M, Bazylinski DA, Lombardot T, Glockner FO, Reinhardt R, Schuler DJ Bacteriol10.1128/JB.00119-072007Bacterial Proteins/*genetics, Computational Biology, Genes, Bacterial/*genetics, *Genome, Bacterial, Genomics/methods, Magnetics, Magnetospirillum/*genetics/physiology, Open Reading Frames/genetics, Operon/genetics, PhylogenyPhylogeny
Metabolism18972162Identification of iron transporters expressed in the magnetotactic bacterium Magnetospirillum magnetotacticum.Taoka A, Umeyama C, Fukumori YCurr Microbiol10.1007/s00284-008-9305-72008Bacterial Outer Membrane Proteins/chemistry/genetics/metabolism, Bacterial Proteins/chemistry/genetics/*metabolism, Cation Transport Proteins/chemistry/genetics/*metabolism, Electrophoresis, Gel, Two-Dimensional, Ferrosoferric Oxide/*metabolism, *Gene Expression, Magnetics, Magnetospirillum/chemistry/genetics/*metabolism, Molecular Weight, Receptors, Cell Surface/chemistry/genetics/metabolismEnzymology
Metabolism19500838On the change in bacterial size and magnetosome features for Magnetospirillum magnetotacticum (MS-1) under high concentrations of zinc and nickel.Kundu S, Kale AA, Banpurkar AG, Kulkarni GR, Ogale SBBiomaterials10.1016/j.biomaterials.2009.04.0392009Bacterial Proteins/chemistry/metabolism, Cytoplasmic Vesicles/chemistry/*metabolism, *Ferrosoferric Oxide/chemistry/metabolism, Magnetics, *Magnetospirillum/chemistry/metabolism/ultrastructure, Nanoparticles/chemistry, Nickel/*metabolism, Zinc/*metabolism
Biotechnology20795371Enhancement of magnetotactic bacterial yield in a modified MSGM medium without alteration of magnetosomes properties.Kundu S, Kulkarni GRIndian J Exp Biol2010Bacteriological Techniques, Culture Media/*pharmacology, Electron Probe Microanalysis, Ferrosoferric Oxide/analysis, Magnetics, Magnetosomes/*physiology/ultrastructure, Magnetospirillum/*drug effects/physiology/ultrastructure, Microscopy, Electron, ScanningCultivation
Biotechnology22952408Biological colloid engineering: Self-assembly of dipolar ferromagnetic chains in a functionalized biogenic ferrofluid.Ruder WC, Hsu CP, Edelman BD Jr, Schwartz R, Leduc PRAppl Phys Lett10.1063/1.47423292012
Genetics25838488Genome Sequence of Magnetospirillum magnetotacticum Strain MS-1.Smalley MD, Marinov GK, Bertani LE, DeSalvo GGenome Announc10.1128/genomeA.00233-152015
Pathogenicity25993286Effect of Polyethylene Glycol on the Formation of Magnetic Nanoparticles Synthesized by Magnetospirillum magnetotacticum MS-1.Shimoshige H, Kobayashi H, Mizuki T, Nagaoka Y, Inoue A, Maekawa TPLoS One10.1371/journal.pone.01274812015Culture Media/pharmacology, Magnetite Nanoparticles/*chemistry/ultrastructure, Magnetosomes/drug effects/ultrastructure, Magnetospirillum/drug effects/growth & development/*metabolism, Polyethylene Glycols/*pharmacologyCultivation
Metabolism26276219Magnetic properties of magnetite synthesized by Magnetospirillum magnetotacticum MS-1 cultured with different concentrations of ferric iron.Yiriletu, Iwasa TBiotechnol Lett10.1007/s10529-015-1928-82015Culture Media/chemistry, Ferrosoferric Oxide/*metabolism, Iron/*metabolism, *Magnetics, Magnetospirillum/*metabolismCultivation
Phylogeny26921147Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia.Dziuba M, Koziaeva V, Grouzdev D, Burganskaya E, Baslerov R, Kolganova T, Chernyadyev A, Osipov G, Andrianova E, Gorlenko V, Kuznetsov BInt J Syst Evol Microbiol10.1099/ijsem.0.0009942016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Magnetosomes, Magnetospirillum/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNATranscriptome
Pathogenicity27118760MS-1 magA: Revisiting Its Efficacy as a Reporter Gene for MRI.Pereira SM, Williams SR, Murray P, Taylor AMol Imaging10.1177/15360121166415332016Animals, Bacterial Proteins/*pharmacology, Cation Transport Proteins/*pharmacology, Cell Survival/drug effects, Cells, Cultured, Contrast Media, *Genes, Reporter, HEK293 Cells, Humans, Iron/metabolism, Magnetic Resonance Imaging/*methods, Mesenchymal Stem Cells/cytology/*drug effects, MiceMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1484Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3856)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3856
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83116Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3553.1StrainInfo: A central database for resolving microbial strain identifiers