Strain identifier
BacDive ID: 13943
Type strain:
Species: Magnetospirillum magnetotacticum
Strain Designation: MS-1
Strain history: IAM 14723 <-- IFO 15272 <-- DSM 3856 <-- ATCC 31632 <-- R. P. Blakemore MS-1.
NCBI tax ID(s): 188 (species)
General
@ref: 1484
BacDive-ID: 13943
DSM-Number: 3856
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Magnetospirillum magnetotacticum MS-1 is a microaerophile, mesophilic bacterium that was isolated from freshwater sediment.
NCBI tax id
- NCBI tax id: 188
- Matching level: species
strain history
@ref | history |
---|---|
1484 | <- ATCC <- R. P. Blakemore, University of New Hampshire, Department of Microbiology, Durham, New Hampshire, USA; MS-1 |
67770 | IAM 14723 <-- IFO 15272 <-- DSM 3856 <-- ATCC 31632 <-- R. P. Blakemore MS-1. |
doi: 10.13145/bacdive13943.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum magnetotacticum
- full scientific name: Magnetospirillum magnetotacticum (Maratea and Blakemore 1981) Schleifer et al. 1992
synonyms
@ref synonym 20215 Paramagnetospirillum magnetotacticum 20215 Aquaspirillum magnetotacticum
@ref: 1484
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum magnetotacticum
full scientific name: Magnetospirillum magnetotacticum (Maratea and Blakemore 1981) Schleifer et al. 1992
strain designation: MS-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1484
- name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)
- growth: yes
- link: https://mediadive.dsmz.de/medium/380
- composition: Name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380) Composition: Agar 1.3 g/l (optional) KH2PO4 0.68 g/l L(+)-Tartaric acid 0.37 g/l Succinic acid 0.37 g/l NaNO3 0.12 g/l Yeast extract 0.1 g/l Na-thioglycolate 0.05 g/l Na-acetate 0.05 g/l MgSO4 x 7 H2O 0.015 g/l FeCl3 x 6 H2O 0.009 g/l Nitrilotriacetic acid 0.0075 g/l NaCl 0.005 g/l Quinic acid 0.0038 g/l MnSO4 x H2O 0.0025 g/l CoSO4 x 7 H2O 0.0009 g/l ZnSO4 x 7 H2O 0.0009 g/l FeSO4 x 7 H2O 0.0005 g/l Sodium resazurin 0.0005 g/l CaCl2 x 2 H2O 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Nicotinic acid 0.0002 g/l NiCl2 x 6 H2O 0.00015 g/l AlK(SO4)2 x 12 H2O 0.0001 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l CuSO4 x 5 H2O 5e-05 g/l Na2MoO4 x 2 H2O 5e-05 g/l H3BO3 5e-05 g/l D-(+)-biotin 2e-05 g/l Na2WO4 x 2 H2O 2e-06 g/l Na2SeO3 x 5 H2O 1.5e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1484 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1484
- oxygen tolerance: microaerophile
compound production
- @ref: 1484
- compound: iron reductase
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
1484 | freshwater sediment | Massachusetts, Woods Hole, Cedar swamp | USA | USA | North America |
67770 | Freshwater swamp |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Sediment |
#Environmental | #Aquatic | #Freshwater |
taxonmaps
- @ref: 69479
- File name: preview.99_1353.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_782;97_911;98_1068;99_1353&stattab=map
- Last taxonomy: Magnetospirillum
- 16S sequence: Y10110
- Sequence Identity:
- Total samples: 10527
- soil counts: 1907
- aquatic counts: 6745
- animal counts: 813
- plant counts: 1062
Safety information
risk assessment
- @ref: 1484
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Magnetospirillum magnetotacticum gene for 16S rRNA, partial sequence, strain: NBRC 15272 | AB680822 | 1409 | ena | 188 |
1484 | M.magnetotacticum SSU rRNA gene, partial | Y10110 | 1443 | ena | 188 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Magnetospirillum magnetotacticum MS-1 | GCA_000829825 | contig | ncbi | 272627 |
66792 | Magnetospirillum magnetotacticum MS-1 | 272627.4 | wgs | patric | 272627 |
66792 | Magnetospirillum magnetotacticum MS-1 | 2645727833 | draft | img | 272627 |
GC content
- @ref: 1484
- GC-content: 64.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 83.826 | no |
gram-positive | no | 97.95 | no |
anaerobic | no | 94.321 | yes |
halophile | no | 96.009 | no |
spore-forming | no | 89.913 | no |
glucose-util | yes | 84.203 | no |
aerobic | no | 61.151 | no |
thermophile | no | 99.691 | no |
flagellated | yes | 57.46 | no |
glucose-ferment | no | 87.563 | no |
External links
@ref: 1484
culture collection no.: DSM 3856, ATCC 31632, IFO 15272, NBRC 15272, JCM 21281, IAM 14723, LMG 10894, LMG 5965, LMG 6118, NCIMB 12542
straininfo link
- @ref: 83116
- straininfo: 3553
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 1314800 | Gene transfer in magnetic bacteria: transposon mutagenesis and cloning of genomic DNA fragments required for magnetosome synthesis. | Matsunaga T, Nakamura C, Burgess JG, Sode K | J Bacteriol | 10.1128/jb.174.9.2748-2753.1992 | 1992 | Cloning, Molecular, Conjugation, Genetic, DNA Transposable Elements, Escherichia coli/genetics, Ferrosoferric Oxide, Genetic Vectors, Iron/*metabolism, Mutagenesis, Insertional, Oxides/*metabolism, Plasmids/genetics, Restriction Mapping, Spirillum/*genetics, Transfection | Metabolism |
Enzymology | 1766390 | Cloning of a sequence of Aquaspirillum magnetotacticum that complements the aroD gene of Escherichia coli. | Berson AE, Hudson DV, Waleh NS | Mol Microbiol | 10.1111/j.1365-2958.1991.tb02156.x | 1991 | Cloning, Molecular, Cosmids/genetics, Cytoplasmic Granules, Escherichia coli/*genetics, Ferric Compounds/*metabolism, Gene Library, Genetic Complementation Test, Gram-Negative Bacteria/*genetics, Hydro-Lyases/*genetics, Magnetics, Restriction Mapping | Metabolism |
Enzymology | 2684080 | Periplasmic superoxide dismutases in Aquaspirillum magnetotacticum. | Short KA, Blakemore RP | Arch Microbiol | 10.1007/BF00425171 | 1989 | Catalase/metabolism, Electrophoresis, Polyacrylamide Gel, Escherichia coli/enzymology, Kinetics, Molecular Weight, Peroxidases/metabolism, Species Specificity, Spirillum/*enzymology, Superoxide Dismutase/isolation & purification/*metabolism | Metabolism |
Metabolism | 2941414 | Hydroxamate production by Aquaspirillum magnetotacticum. | Paoletti LC, Blakemore RP | J Bacteriol | 10.1128/jb.167.1.73-76.1986 | 1986 | Bacteria/*metabolism, Bacterial Outer Membrane Proteins/biosynthesis, Ferric Compounds/metabolism/pharmacology, Hydroxamic Acids/*biosynthesis/pharmacology, Iron Chelating Agents/biosynthesis, Molecular Weight, Quinic Acid/metabolism/pharmacology, Salmonella typhimurium/growth & development, Siderophores | Biotechnology |
Enzymology | 3015890 | Iron respiration-driven proton translocation in aerobic bacteria. | Short KA, Blakemore RP | J Bacteriol | 10.1128/jb.167.2.729-731.1986 | 1986 | Aerobiosis, Bacillus subtilis/*physiology, *Bacterial Physiological Phenomena, Biological Transport, Escherichia coli/*physiology, Iron/*physiology, Nitrate Reductase, Nitrate Reductases/metabolism, Oxidation-Reduction, Protons | Metabolism |
Phylogeny | 7691800 | Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic analysis of 16S rDNA sequences. | Burgess JG, Kawaguchi R, Sakaguchi T, Thornhill RH, Matsunaga T | J Bacteriol | 10.1128/jb.175.20.6689-6694.1993 | 1993 | Bacteria/*genetics, Base Sequence, Biological Evolution, DNA Primers/chemistry, DNA, Ribosomal/*genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Sequence Alignment | Genetics |
Enzymology | 8013655 | Purification, and some molecular and enzymatic features of a novel ccb-type cytochrome c oxidase from a microaerobic denitrifier, Magnetospirillum magnetotacticum. | Tamegai H, Fukumori Y | FEBS Lett | 10.1016/0014-5793(94)00500-1 | 1994 | Bacteria/*enzymology, Cell Fractionation, Cytochrome c Group/metabolism, Electron Transport Complex IV/classification/isolation & purification/*metabolism, Heme/analysis, Iron/analysis, Magnetics, Oxidation-Reduction, Protein Conformation, Spectrophotometry | Metabolism |
Enzymology | 8251522 | Purification and properties of a 'cytochrome a1'-like hemoprotein from a magnetotactic bacterium, Aquaspirillum magnetotacticum. | Tamegai H, Yamanaka T, Fukumori Y | Biochim Biophys Acta | 10.1016/0304-4165(93)90020-9 | 1993 | Cytochrome a Group/chemistry/*isolation & purification, Cytochromes a1, Heme/chemistry/*isolation & purification, Magnetics, Spectrophotometry, Ultraviolet, Spirillum/*chemistry | Phylogeny |
Enzymology | 10094692 | Iron reductase for magnetite synthesis in the magnetotactic bacterium Magnetospirillum magnetotacticum. | Noguchi Y, Fujiwara T, Yoshimatsu K, Fukumori Y | J Bacteriol | 10.1128/JB.181.7.2142-2147.1999 | 1999 | *FMN Reductase, Ferric Compounds/metabolism, Ferrosoferric Oxide, Iron/*metabolism, NADH, NADPH Oxidoreductases/isolation & purification/*metabolism, Oxides/*metabolism, Rhodospirillaceae/*enzymology | Metabolism |
Genetics | 11250081 | Physical and genetic characterization of the genome of Magnetospirillum magnetotacticum, strain MS-1. | Bertani LE, Weko J, Phillips KV, Gray RF, Kirschvink JL | Gene | 10.1016/s0378-1119(01)00331-6 | 2001 | Amino Acid Sequence, *Bacterial Proteins, Base Sequence, Carrier Proteins/genetics, *Cation Transport Proteins, Cytochrome b Group/genetics, DNA, Bacterial/chemistry/genetics, DNA, Circular/genetics, Electrophoresis, Gel, Pulsed-Field, Ferritins/genetics, Gene Order, *Genome, Bacterial, Membrane Proteins/genetics, Molecular Sequence Data, Protein Subunits, Restriction Mapping, Rhodospirillaceae/*genetics, Sequence Analysis, DNA | Enzymology |
Enzymology | 12795406 | Nitrate reductase from the magnetotactic bacterium Magnetospirillum magnetotacticum MS-1: purification and sequence analyses. | Taoka A, Yoshimatsu K, Kanemori M, Fukumori Y | Can J Microbiol | 10.1139/w03-028 | 2003 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, Culture Media, Ferrosoferric Oxide, Iron/chemistry/metabolism, Models, Genetic, Molecular Sequence Data, Molybdenum/metabolism, Nitrate Reductase, Nitrate Reductases/*genetics/isolation & purification, Operon/genetics, Oxides/chemistry, Phylogeny, Rhodospirillaceae/*enzymology/genetics, Sequence Alignment, Sequence Analysis | Transcriptome |
16346418 | Denitrification and Assimilatory Nitrate Reduction in Aquaspirillum magnetotacticum. | Bazylinski DA, Blakemore RP | Appl Environ Microbiol | 10.1128/aem.46.5.1118-1124.1983 | 1983 | |||
Genetics | 17449609 | Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function. | Richter M, Kube M, Bazylinski DA, Lombardot T, Glockner FO, Reinhardt R, Schuler D | J Bacteriol | 10.1128/JB.00119-07 | 2007 | Bacterial Proteins/*genetics, Computational Biology, Genes, Bacterial/*genetics, *Genome, Bacterial, Genomics/methods, Magnetics, Magnetospirillum/*genetics/physiology, Open Reading Frames/genetics, Operon/genetics, Phylogeny | Phylogeny |
Metabolism | 18972162 | Identification of iron transporters expressed in the magnetotactic bacterium Magnetospirillum magnetotacticum. | Taoka A, Umeyama C, Fukumori Y | Curr Microbiol | 10.1007/s00284-008-9305-7 | 2008 | Bacterial Outer Membrane Proteins/chemistry/genetics/metabolism, Bacterial Proteins/chemistry/genetics/*metabolism, Cation Transport Proteins/chemistry/genetics/*metabolism, Electrophoresis, Gel, Two-Dimensional, Ferrosoferric Oxide/*metabolism, *Gene Expression, Magnetics, Magnetospirillum/chemistry/genetics/*metabolism, Molecular Weight, Receptors, Cell Surface/chemistry/genetics/metabolism | Enzymology |
Metabolism | 19500838 | On the change in bacterial size and magnetosome features for Magnetospirillum magnetotacticum (MS-1) under high concentrations of zinc and nickel. | Kundu S, Kale AA, Banpurkar AG, Kulkarni GR, Ogale SB | Biomaterials | 10.1016/j.biomaterials.2009.04.039 | 2009 | Bacterial Proteins/chemistry/metabolism, Cytoplasmic Vesicles/chemistry/*metabolism, *Ferrosoferric Oxide/chemistry/metabolism, Magnetics, *Magnetospirillum/chemistry/metabolism/ultrastructure, Nanoparticles/chemistry, Nickel/*metabolism, Zinc/*metabolism | |
Biotechnology | 20795371 | Enhancement of magnetotactic bacterial yield in a modified MSGM medium without alteration of magnetosomes properties. | Kundu S, Kulkarni GR | Indian J Exp Biol | 2010 | Bacteriological Techniques, Culture Media/*pharmacology, Electron Probe Microanalysis, Ferrosoferric Oxide/analysis, Magnetics, Magnetosomes/*physiology/ultrastructure, Magnetospirillum/*drug effects/physiology/ultrastructure, Microscopy, Electron, Scanning | Cultivation | |
Biotechnology | 22952408 | Biological colloid engineering: Self-assembly of dipolar ferromagnetic chains in a functionalized biogenic ferrofluid. | Ruder WC, Hsu CP, Edelman BD Jr, Schwartz R, Leduc PR | Appl Phys Lett | 10.1063/1.4742329 | 2012 | ||
Genetics | 25838488 | Genome Sequence of Magnetospirillum magnetotacticum Strain MS-1. | Smalley MD, Marinov GK, Bertani LE, DeSalvo G | Genome Announc | 10.1128/genomeA.00233-15 | 2015 | ||
Pathogenicity | 25993286 | Effect of Polyethylene Glycol on the Formation of Magnetic Nanoparticles Synthesized by Magnetospirillum magnetotacticum MS-1. | Shimoshige H, Kobayashi H, Mizuki T, Nagaoka Y, Inoue A, Maekawa T | PLoS One | 10.1371/journal.pone.0127481 | 2015 | Culture Media/pharmacology, Magnetite Nanoparticles/*chemistry/ultrastructure, Magnetosomes/drug effects/ultrastructure, Magnetospirillum/drug effects/growth & development/*metabolism, Polyethylene Glycols/*pharmacology | Cultivation |
Metabolism | 26276219 | Magnetic properties of magnetite synthesized by Magnetospirillum magnetotacticum MS-1 cultured with different concentrations of ferric iron. | Yiriletu, Iwasa T | Biotechnol Lett | 10.1007/s10529-015-1928-8 | 2015 | Culture Media/chemistry, Ferrosoferric Oxide/*metabolism, Iron/*metabolism, *Magnetics, Magnetospirillum/*metabolism | Cultivation |
Phylogeny | 26921147 | Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia. | Dziuba M, Koziaeva V, Grouzdev D, Burganskaya E, Baslerov R, Kolganova T, Chernyadyev A, Osipov G, Andrianova E, Gorlenko V, Kuznetsov B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000994 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Magnetosomes, Magnetospirillum/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA | Transcriptome |
Pathogenicity | 27118760 | MS-1 magA: Revisiting Its Efficacy as a Reporter Gene for MRI. | Pereira SM, Williams SR, Murray P, Taylor A | Mol Imaging | 10.1177/1536012116641533 | 2016 | Animals, Bacterial Proteins/*pharmacology, Cation Transport Proteins/*pharmacology, Cell Survival/drug effects, Cells, Cultured, Contrast Media, *Genes, Reporter, HEK293 Cells, Humans, Iron/metabolism, Magnetic Resonance Imaging/*methods, Mesenchymal Stem Cells/cytology/*drug effects, Mice | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1484 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3856) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3856 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
83116 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3553.1 | StrainInfo: A central database for resolving microbial strain identifiers |