Shigella dysenteriae (CIP 56.33)

Name: Shigella dysenteriae (CIP 56.33)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139018

Type strain

Culture col. no. CIP 56.33

NCBI tax ID(s) 622

Special Collections CIP

History 1956, S. Rubinsten: strain 7

Links

Shigella dysenteriae CIP 56.33 is a bacterium of the family Enterobacteriaceae.

Bacteria

Name and taxonomic classification

SI-ID 70120

CIP 56.33

@ref 20215

Last LPSN update 2026-02-09 11:33:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Shigella

Species Shigella dysenteriae

Full scientific name Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonyms (1)

"Bacillus dysentericus"

BacDive ID	Other strains from **Shigella dysenteriae** (51)	Type strain
138456	S. dysenteriae CIP 57.28, ATCC 13313, CCUG 9565, NCTC 4837 (type strain)
131935	S. dysenteriae RKI00-04776, DSM 103303
134426	S. dysenteriae M158, 34, CIP 106191
134427	S. dysenteriae Bagdad 7/66, CIP 67.60
134428	S. dysenteriae 252, CIP 59.3
134431	S. dysenteriae Bagdad 5/66, CIP 67.59
134738	S. dysenteriae CIP 58.26, NCTC 9347
134739	S. dysenteriae 418/55, CIP 58.28
135177	S. dysenteriae 599-52, CIP 53.134, NCTC 9345
135203	S. dysenteriae 43, CIP 106200
135301	S. dysenteriae 4219-50, CIP 52.120
135385	S. dysenteriae 54188, CIP 54.57
135580	S. dysenteriae CIP 54.51
135603	S. dysenteriae 589, CIP 57.42
135604	S. dysenteriae 3873-50, CIP 58.16, NCTC 9349
135606	S. dysenteriae 3307-53, 58, CIP 58.25, NCTC 9348
135718	S. dysenteriae 54921, CIP 56.17
135719	S. dysenteriae 54268, CIP 54.77
135721	S. dysenteriae 588, CIP 58.1
135722	S. dysenteriae 309, CIP 59.1
135723	S. dysenteriae 41, CIP 59.2
135724	S. dysenteriae 6270, CIP 59.4
136016	S. dysenteriae CIP 52.31
136061	S. dysenteriae 1048-50, CIP 52.122
137043	S. dysenteriae 4325, CIP 54.95
137393	S. dysenteriae Bucarest S, CIP 55.137
137398	S. dysenteriae CIP 82.34, ATCC 11835
138512	S. dysenteriae Bagdad 57/46, CIP 67.58
138544	S. dysenteriae Bucarest R, CIP 55.139
139001	S. dysenteriae Bucarest R, CIP 55.90
139003	S. dysenteriae CIP 53.127
139005	S. dysenteriae Norwich, CIP 52.27
139006	S. dysenteriae 9D, CIP 52.28
139007	S. dysenteriae CIP 52.30
139008	S. dysenteriae CIP 52.32
139009	S. dysenteriae 1012, CIP 54.49
139010	S. dysenteriae CIP 54.50
139012	S. dysenteriae 4388-50, CIP 58.15, NCTC 9350
139013	S. dysenteriae 1046-50, CIP 52.121
139014	S. dysenteriae CIP 52.123, NCTC 9763
139015	S. dysenteriae 1768-53, CIP 53.135
139016	S. dysenteriae 52287, CIP 53.136
139017	S. dysenteriae 120, CIP 56.16
139150	S. dysenteriae CIP 52.33
139306	S. dysenteriae 41, M183, CIP 106198
143352	S. dysenteriae CCUG 18713
145726	S. dysenteriae CCUG 29414
149515	S. dysenteriae CCUG 37887
149516	S. dysenteriae CCUG 37888
149517	S. dysenteriae CCUG 37889
150348	S. dysenteriae CCUG 39701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.3
125438	negative	99.75

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
41020	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

Culture temp

@ref	Growth	Type	Temperature (°C)
41020	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	98

Spore formation

@ref	Spore formation	Confidence
125439		97.4
125438		91.45

Isolation, sampling and environmental information

Isolation

@ref	Geographic location	Country	Country ISO 3 Code	Continent
41020	Addis-Abeba	Ethiopia	ETH	Africa

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID
66792	Shigella dysenteriae strain CIP56.33	contig	622.145	622

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shigella dysenteriae strain CIP56.33
PATRIC: 622.145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.40	no
125439	motility	BacteriaNetⓘ	yes	66.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	98.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shigella dysenteriae strain CIP56.33
PATRIC: 622.145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	92.92	no
125438	spore-forming	spore-formingⓘ	no	91.45	no
125438	aerobic	aerobicⓘ	no	73.45	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	no	56.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp.	Gorge O, Lopez S, Hilaire V, Lisanti O, Ramisse V, Vergnaud G.	J Clin Microbiol	10.1128/jcm.02027-07	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41020	Collection of Institut Pasteur ; Curators of the CIP; CIP 56.33
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shigella dysenteriae (CIP 56.33)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome-based predictions

Predictions

Literature

Literature

References

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