Shigella dysenteriae (DSM 103303, RKI00-04776)

Name: Shigella dysenteriae (DSM 103303, RKI00-04776)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131935

Type strain

Strain Designation RKI00-04776

Culture col. no. DSM 103303 RKI00-04776

NCBI tax ID(s) 622

Special Collections DSMZ

History <- Robert-Koch-Institut, Wernigerode, Germany; RKI00-04776 <- Labor Wagner, Göttingen, Germany

Links

Shigella dysenteriae RKI00-04776 is a bacterium that was isolated from human faeces .

Bacteria

Name and taxonomic classification

SI-ID 399936

DSM 103303

@ref 20215

Last LPSN update 2026-02-09 11:31:35

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Shigella

Species Shigella dysenteriae

Full scientific name Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonyms (1)

"Bacillus dysentericus"

BacDive ID	Other strains from **Shigella dysenteriae** (51)	Type strain
138456	S. dysenteriae CIP 57.28, ATCC 13313, CCUG 9565, NCTC 4837 (type strain)
134426	S. dysenteriae M158, 34, CIP 106191
134427	S. dysenteriae Bagdad 7/66, CIP 67.60
134428	S. dysenteriae 252, CIP 59.3
134431	S. dysenteriae Bagdad 5/66, CIP 67.59
134738	S. dysenteriae CIP 58.26, NCTC 9347
134739	S. dysenteriae 418/55, CIP 58.28
135177	S. dysenteriae 599-52, CIP 53.134, NCTC 9345
135203	S. dysenteriae 43, CIP 106200
135301	S. dysenteriae 4219-50, CIP 52.120
135385	S. dysenteriae 54188, CIP 54.57
135580	S. dysenteriae CIP 54.51
135603	S. dysenteriae 589, CIP 57.42
135604	S. dysenteriae 3873-50, CIP 58.16, NCTC 9349
135606	S. dysenteriae 3307-53, 58, CIP 58.25, NCTC 9348
135718	S. dysenteriae 54921, CIP 56.17
135719	S. dysenteriae 54268, CIP 54.77
135721	S. dysenteriae 588, CIP 58.1
135722	S. dysenteriae 309, CIP 59.1
135723	S. dysenteriae 41, CIP 59.2
135724	S. dysenteriae 6270, CIP 59.4
136016	S. dysenteriae CIP 52.31
136061	S. dysenteriae 1048-50, CIP 52.122
137043	S. dysenteriae 4325, CIP 54.95
137393	S. dysenteriae Bucarest S, CIP 55.137
137398	S. dysenteriae CIP 82.34, ATCC 11835
138512	S. dysenteriae Bagdad 57/46, CIP 67.58
138544	S. dysenteriae Bucarest R, CIP 55.139
139001	S. dysenteriae Bucarest R, CIP 55.90
139003	S. dysenteriae CIP 53.127
139005	S. dysenteriae Norwich, CIP 52.27
139006	S. dysenteriae 9D, CIP 52.28
139007	S. dysenteriae CIP 52.30
139008	S. dysenteriae CIP 52.32
139009	S. dysenteriae 1012, CIP 54.49
139010	S. dysenteriae CIP 54.50
139012	S. dysenteriae 4388-50, CIP 58.15, NCTC 9350
139013	S. dysenteriae 1046-50, CIP 52.121
139014	S. dysenteriae CIP 52.123, NCTC 9763
139015	S. dysenteriae 1768-53, CIP 53.135
139016	S. dysenteriae 52287, CIP 53.136
139017	S. dysenteriae 120, CIP 56.16
139018	S. dysenteriae CIP 56.33
139150	S. dysenteriae CIP 52.33
139306	S. dysenteriae 41, M183, CIP 106198
143352	S. dysenteriae CCUG 18713
145726	S. dysenteriae CCUG 29414
149515	S. dysenteriae CCUG 37887
149516	S. dysenteriae CCUG 37888
149517	S. dysenteriae CCUG 37889
150348	S. dysenteriae CCUG 39701

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23727	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23727	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23727	positive	growth	37

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68368	16136 ChEBI	hydrogen sulfide		from API 20E
68368	35581 ChEBI	indole		from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68368	35581 ChEBI	indole	+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
23727	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	+	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
23727	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
23727	human faeces (infection associated with a travel to Egypt)	Göttingen	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23727	2	Risk group (German classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23727	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103303
#68368	Automatically annotated from API 20E .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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