Shigella dysenteriae (CIP 57.28, ATCC 13313, CCUG 9565)

Name: Shigella dysenteriae (CIP 57.28, ATCC 13313, CCUG 9565)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138456

Type strain

Culture col. no. CIP 57.28 ATCC 13313 CCUG 9565 NCTC 4837

NCBI tax ID(s) 622

Special Collections CCUG CIP

History CIP <- 1957, NCTC <- 1935, W.M. Scott, Newcastle, UK

Links

Shigella dysenteriae CIP 57.28 is a facultative anaerobe, Gram-negative, rod-shaped bacterium of the family Enterobacteriaceae.

Gram-negative rod-shaped facultative anaerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 45536

ATCC 13313,CCUG 9565,NCTC 4837,CECT 584,CCRC 13983,CECT 853,DSM 4781,BCRC 13983,CIP 57.28

@ref 20215

Last LPSN update 2026-02-09 11:33:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Shigella

Species Shigella dysenteriae

Full scientific name Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonyms (1)

"Bacillus dysentericus"

BacDive ID	Other strains from **Shigella dysenteriae** (51)	Type strain
131935	S. dysenteriae RKI00-04776, DSM 103303
134426	S. dysenteriae M158, 34, CIP 106191
134427	S. dysenteriae Bagdad 7/66, CIP 67.60
134428	S. dysenteriae 252, CIP 59.3
134431	S. dysenteriae Bagdad 5/66, CIP 67.59
134738	S. dysenteriae CIP 58.26, NCTC 9347
134739	S. dysenteriae 418/55, CIP 58.28
135177	S. dysenteriae 599-52, CIP 53.134, NCTC 9345
135203	S. dysenteriae 43, CIP 106200
135301	S. dysenteriae 4219-50, CIP 52.120
135385	S. dysenteriae 54188, CIP 54.57
135580	S. dysenteriae CIP 54.51
135603	S. dysenteriae 589, CIP 57.42
135604	S. dysenteriae 3873-50, CIP 58.16, NCTC 9349
135606	S. dysenteriae 3307-53, 58, CIP 58.25, NCTC 9348
135718	S. dysenteriae 54921, CIP 56.17
135719	S. dysenteriae 54268, CIP 54.77
135721	S. dysenteriae 588, CIP 58.1
135722	S. dysenteriae 309, CIP 59.1
135723	S. dysenteriae 41, CIP 59.2
135724	S. dysenteriae 6270, CIP 59.4
136016	S. dysenteriae CIP 52.31
136061	S. dysenteriae 1048-50, CIP 52.122
137043	S. dysenteriae 4325, CIP 54.95
137393	S. dysenteriae Bucarest S, CIP 55.137
137398	S. dysenteriae CIP 82.34, ATCC 11835
138512	S. dysenteriae Bagdad 57/46, CIP 67.58
138544	S. dysenteriae Bucarest R, CIP 55.139
139001	S. dysenteriae Bucarest R, CIP 55.90
139003	S. dysenteriae CIP 53.127
139005	S. dysenteriae Norwich, CIP 52.27
139006	S. dysenteriae 9D, CIP 52.28
139007	S. dysenteriae CIP 52.30
139008	S. dysenteriae CIP 52.32
139009	S. dysenteriae 1012, CIP 54.49
139010	S. dysenteriae CIP 54.50
139012	S. dysenteriae 4388-50, CIP 58.15, NCTC 9350
139013	S. dysenteriae 1046-50, CIP 52.121
139014	S. dysenteriae CIP 52.123, NCTC 9763
139015	S. dysenteriae 1768-53, CIP 53.135
139016	S. dysenteriae 52287, CIP 53.136
139017	S. dysenteriae 120, CIP 56.16
139018	S. dysenteriae CIP 56.33
139150	S. dysenteriae CIP 52.33
139306	S. dysenteriae 41, M183, CIP 106198
143352	S. dysenteriae CCUG 18713
145726	S. dysenteriae CCUG 29414
149515	S. dysenteriae CCUG 37887
149516	S. dysenteriae CCUG 37888
149517	S. dysenteriae CCUG 37889
150348	S. dysenteriae CCUG 39701

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		92.6
125438	negative		99.75
39791	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
39791	MEDIUM 3 - Columbia agar	Columbia agar (39.000 g);distilled water (1000.000 ml)
39791	CIP Medium 3		Medium recipe at CIP
39791	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
39791	positive	growth	30
39791	positive	growth	30-41
39791	negative	growth	5
39791	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
39791	facultative anaerobe
125439	aerobe	96

Spore formation

@ref	Spore formation	Confidence
125439		92.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
39791	16947 ChEBI	citrate	-	carbon source
39791	17234 ChEBI	glucose	+	fermentation
39791	17234 ChEBI	glucose	+	degradation
39791	17716 ChEBI	lactose	-	fermentation
39791	15792 ChEBI	malonate	-	assimilation
39791	29864 ChEBI	mannitol	-	fermentation
39791	17632 ChEBI	nitrate	+	reduction
39791	16301 ChEBI	nitrite	-	reduction
39791	132112 ChEBI	sodium thiosulfate	-	builds gas from

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
39791	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
39791	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
39791	15688 ChEBI	acetoin	-
39791	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
39791	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
39791	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
39791	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
39791	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
39791	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
39791	ornithine decarboxylase	-	4.1.1.17
39791	oxidase	-
39791	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
39791	tryptophan deaminase	-
39791	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
39791	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
39791	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	+	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation

45201

Sampling date1934

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39791	3	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM294967v1 assembly for Shigella dysenteriae ATCC 13313	complete	GCA_002949675	622.424	2850767282	622	96.7
66792	57940_E01 assembly for Shigella dysenteriae NCTC4837	contig	GCA_900457215	622.509	2916533085	622	71.18
66792	Shigella dysenteriae strain CIP57.28	contig		622.104		622

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shigella dysenteriae ATCC 13313
NCBI: GCA_002949675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.20	no
125439	motility	BacteriaNetⓘ	yes	61.70	no
125439	gram_stain	BacteriaNetⓘ	negative	92.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	96.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shigella dysenteriae ATCC 13313
NCBI: GCA_002949675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	93.42	no
125438	aerobic	aerobicⓘ	no	73.74	no
125438	spore-forming	spore-formingⓘ	no	89.95	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	53.80	no

Literature

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Enzymology	Cell extract-containing medium for culture of intracellular fastidious bacteria.	Singh S, Kowalczewska M, Edouard S, Eldin C, Perreal C, Weber P, Azza S, Raoult D.	J Clin Microbiol	10.1128/jcm.00719-13	2013
Genetics	Whole-genome characterization and antibiotic resistance phenotype of Escherichia marmotae first isolated from Berylmys bowersi.	Liu Y, Zhou J, Gu T, Ai W, Zhou J, Ma Q, Hu Y, Li S.	Microbiol Spectr	10.1128/spectrum.02946-24	2025
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Pathogenicity	In vitro synergy of 5-nitrofurans, vancomycin and sodium deoxycholate against Gram-negative pathogens.	Olivera C, Le VVH, Davenport C, Rakonjac J.	J Med Microbiol	10.1099/jmm.0.001304	2021
	Immunogenicity and preclinical efficacy characterization of ShecVax, a combined vaccine against Shigella and enterotoxigenic Escherichia coli.	Li S, Upadhyay I, Seo H, Vakamalla SSR, Madhwal A, Sack DA, Zhang W.	Infect Immun	10.1128/iai.00004-25	2025
Phylogeny	Genome Analysis of a Historical Shigella dysenteriae Serotype 1 Strain Carrying a Conserved Stx Prophage Region.	Svab D, Falgenhauer L, Horvath B, Maroti G, Falgenhauer J, Chakraborty T, Toth I.	Front Microbiol	10.3389/fmicb.2020.614793	2020
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	Effects of Structural Manipulation on the Bioactivity of some Coumarin-Based Products.	Fakri Mustafa Y, Riyadh Khalil R, Tareq Mohammed E, Bashir MK, Khudhayer Oglah M.	Arch Razi Inst	10.22092/ari.2021.356100.1776	2021
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Genetics	Multiple Mechanisms Confer Resistance to Azithromycin in Shigella in Bangladesh: a Comprehensive Whole Genome-Based Approach.	Nusrin S, Asad A, Hayat S, Islam B, Begum R, Nabila FH, Islam Z.	Microbiol Spectr	10.1128/spectrum.00741-22	2022
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	Preparation of polyclonal antibody against a universal bacterial antigen OmpA deduced by bioinformatic analysis and preliminary evaluation of concentration effects on foodborne pathogens.	Wang L, Ke Y, Li Y, Li Y, Yan Y, Song Y, Yang R, Gao B, Han Y.	Heliyon	10.1016/j.heliyon.2023.e16353	2023
Pathogenicity	In vitro antibacterial activity of poly (amidoamine)-G7 dendrimer.	Gholami M, Mohammadi R, Arzanlou M, Akbari Dourbash F, Kouhsari E, Majidi G, Mohseni SM, Nazari S.	BMC Infect Dis	10.1186/s12879-017-2513-7	2017
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Genetics	Unveiling the Probiotic Potential of Streptococcus thermophilus MCC0200: Insights from In Vitro Studies Corroborated with Genome Analysis.	Kapse N, Pisu V, Dhakephalkar T, Margale P, Shetty D, Wagh S, Dagar S, Dhakephalkar PK.	Microorganisms	10.3390/microorganisms12020347	2024
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Biotechnology	Multiplex 16S rRNA-derived geno-biochip for detection of 16 bacterial pathogens from contaminated foods.	Shin HH, Hwang BH, Cha HJ.	Biotechnol J	10.1002/biot.201600043	2016
Pathogenicity	HPLC-DAD analysis, antileishmanial, antiproliferative, and antibacterial activities of Lacistema pubescens: an Amazonian medicinal plant.	da Silva JM, Antinarelli LM, Pinto Nde C, Coimbra ES, de Souza-Fagundes EM, Ribeiro A, Scio E.	Biomed Res Int	10.1155/2014/545038	2014
	In Silico Analysis of the cadF Gene and Development of a Duplex Polymerase Chain Reaction for Species-Specific Identification of Campylobacter jejuni and Campylobacter coli.	Shams S, Bakhshi B, Tohidi Moghadam T.	Jundishapur J Microbiol	10.5812/jjm.29645	2016
Phylogeny	Specific discrimination of three pathogenic Salmonella enterica subsp. enterica serotypes by carB-based oligonucleotide microarray.	Shin HH, Hwang BH, Seo JH, Cha HJ.	Appl Environ Microbiol	10.1128/aem.02978-13	2014
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Enzymology	Evaluation of microplate immunocapture method for detection of Vibrio cholerae, Salmonella Typhi and Shigella flexneri from food.	Fakruddin M, Hossain MN, Ahmed MM.	BMC Microbiol	10.1186/s12866-017-1099-y	2017
	Synthesis, Antimicrobial and Antiinflammatory Activity of 2,5-Disubstituted-1,3,4-oxadiazoles.	Nagalakshmi G.	Indian J Pharm Sci	10.4103/0250-474x.40331	2008
Genetics	Detection of circulating norovirus genotypes: hitting a moving target.	Rooney BL, Pettipas J, Grudeski E, Mykytczuk O, Pang XL, Booth TF, Hatchette TF, LeBlanc JJ.	Virol J	10.1186/1743-422x-11-129	2014
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Pathogenicity	Development of a melting-curve based multiplex real-time PCR assay for simultaneous detection of Streptococcus agalactiae and genes encoding resistance to macrolides and lincosamides.	Otaguiri ES, Morguette AEB, Morey AT, Tavares ER, Kerbauy G, de Almeida Torres RSL, Chaves Junior M, Tognim MCB, Goes VM, Krieger MA, Perugini MRE, Yamauchi LM, Yamada-Ogatta SF.	BMC Pregnancy Childbirth	10.1186/s12884-018-1774-5	2018
Phylogeny	Plant leaves for wrapping zongzi in China: an ethnobotanical study.	Lin F, Luo B, Long B, Long C.	J Ethnobiol Ethnomed	10.1186/s13002-019-0339-7	2019
Phenotype	A Novel pH-Regulated, Unusual 603 bp Overlapping Protein Coding Gene pop Is Encoded Antisense to ompA in Escherichia coli O157:H7 (EHEC).	Zehentner B, Ardern Z, Kreitmeier M, Scherer S, Neuhaus K.	Front Microbiol	10.3389/fmicb.2020.00377	2020
Enzymology	Towards a pathogenic Escherichia coli detection platform using multiplex SYBR®Green Real-time PCR methods and high resolution melting analysis.	Kagkli DM, Folloni S, Barbau-Piednoir E, Van den Eede G, Van den Bulcke M.	PLoS One	10.1371/journal.pone.0039287	2012
Phylogeny	Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics.	Kim HJ, Ryu JO, Lee SY, Kim ES, Kim HY.	BMC Microbiol	10.1186/s12866-015-0577-3	2015
Enzymology	BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay.	Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB.	BMC Microbiol	10.1186/1471-2180-12-56	2012
Phylogeny	Application of the modular approach to an in-house validation study of real-time PCR methods for the detection and serogroup determination of verocytotoxigenic Escherichia coli.	Kagkli DM, Weber TP, Van den Bulcke M, Folloni S, Tozzoli R, Morabito S, Ermolli M, Gribaldo L, Van den Eede G.	Appl Environ Microbiol	10.1128/aem.05357-11	2011
Enzymology	Rapid and sensitive detection of Yersinia pestis using amplification of plague diagnostic bacteriophages monitored by real-time PCR.	Sergueev KV, He Y, Borschel RH, Nikolich MP, Filippov AA.	PLoS One	10.1371/journal.pone.0011337	2010
Metabolism	Identification of TonB homologs in the family Enterobacteriaceae and evidence for conservation of TonB-dependent energy transduction complexes.	Larsen RA, Myers PS, Skare JT, Seachord CL, Darveau RP, Postle K.	J Bacteriol	10.1128/jb.178.5.1363-1373.1996	1996
Biotechnology	Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods.	Venkateswaran K, Kurusu T, Satake M, Shinoda S.	Appl Environ Microbiol	10.1128/aem.62.9.3516-3520.1996	1996
Enzymology	A simple filtration technique to detect enterohemorrhagic Escherichia coli O157:H7 and its toxins in beef by multiplex PCR.	Venkateswaran K, Kamijoh Y, Ohashi E, Nakanishi H.	Appl Environ Microbiol	10.1128/aem.63.10.4127-4131.1997	1997
Enzymology	Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria.	Nelson K, Selander RK.	Proc Natl Acad Sci U S A	10.1073/pnas.91.21.10227	1994
Phylogeny	Differentiation of the ribosomal protein compositions in the genus Escherichia and its related bacteria.	Osawa S, Ito T, Otaka E.	J Bacteriol	10.1128/jb.107.1.168-178.1971	1971
Phylogeny	Evolution of ribosomal proteins in Enterobacteriaceae.	Hori H, Osawa S.	J Bacteriol	10.1128/jb.133.3.1089-1095.1978	1978
Metabolism	Evolution of coenzyme B12 synthesis among enteric bacteria: evidence for loss and reacquisition of a multigene complex.	Lawrence JG, Roth JR.	Genetics	10.1093/genetics/142.1.11	1996
	Use of inosine-containing oligonucleotide primers for enzymatic amplification of different alleles of the gene coding for heat-stable toxin type I of enterotoxigenic Escherichia coli.	Candrian U, Furrer B, Hofelein C, Luthy J.	Appl Environ Microbiol	10.1128/aem.57.4.955-961.1991	1991
Metabolism	Rapid, inexpensive method for specific detection of microbial beta-lactamases by detection of fluorescent end products.	Chen KC, Knapp JS, Holmes KK.	J Clin Microbiol	10.1128/jcm.19.6.818-825.1984	1984
Phylogeny	Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases.	Clarridge JE.	Clin Microbiol Rev	10.1128/cmr.17.4.840-862.2004	2004
	Insertion sequences.	Mahillon J, Chandler M.	Microbiol Mol Biol Rev	10.1128/mmbr.62.3.725-774.1998	1998
	The evolution of insertion sequences within enteric bacteria.	Lawrence JG, Ochman H, Hartl DL.	Genetics	10.1093/genetics/131.1.9	1992
	Development of A Rapid, Low-Cost Portable Detection Assay for Enterococci in Wastewater and Environmental Waters.	Batra AR, Cottam D, Lepesteur M, Dexter C, Zuccala K, Martino C, Khudur L, Daniel V, Ball AS, Soni SK.	Microorganisms	10.3390/microorganisms11020381	2023
	Point-of-Care Lateral Flow Detection of Viable Escherichia coli O157:H7 Using an Improved Propidium Monoazide-Recombinase Polymerase Amplification Method.	Rani A, Dike CC, Mantri N, Ball A.	Foods	10.3390/foods11203207	2022
Biotechnology	Loop-mediated isothermal amplification assays for detecting shiga toxin-producing Escherichia coli in ground beef and human stools.	Wang F, Jiang L, Ge B.	J Clin Microbiol	10.1128/jcm.05612-11	2012
Metabolism	Phosphate regulon in members of the family Enterobacteriaceae: comparison of the phoB-phoR operons of Escherichia coli, Shigella dysenteriae, and Klebsiella pneumoniae.	Lee TY, Makino K, Shinagawa H, Amemura M, Nakata A.	J Bacteriol	10.1128/jb.171.12.6593-6599.1989	1989
Pathogenicity	New antibacterial agent isolated from the avocado pear.	Neeman I, Lifshitz A, Kashman Y.	Appl Microbiol	10.1128/am.19.3.470-473.1970	1970
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References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39791	Collection of Institut Pasteur ; Curators of the CIP; CIP 57.28
#45201	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 9565
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shigella dysenteriae (CIP 57.28, ATCC 13313, CCUG 9565)

Name and taxonomic classification

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API biotype100

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