Shigella dysenteriae (CIP 53.136, 52287)

Name: Shigella dysenteriae (CIP 53.136, 52287)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139016

Type strain

Strain Designation 52287

Culture col. no. CIP 53.136 52287

NCBI tax ID(s) 622

Special Collections CIP

History 1953, L. Chambon, Saigon, Vietnam: strain 52287 CIP <- 1953, L. Chambon, Saigon, Vietnam: strain 52287

Links

Shigella dysenteriae 52287 is a bacterium of the family Enterobacteriaceae.

Bacteria

Name and taxonomic classification

SI-ID 70115

CIP 53.136

@ref 20215

Last LPSN update 2026-02-09 11:33:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Shigella

Species Shigella dysenteriae

Full scientific name Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)

Synonyms (1)

"Bacillus dysentericus"

BacDive ID	Other strains from **Shigella dysenteriae** (51)	Type strain
138456	S. dysenteriae CIP 57.28, ATCC 13313, CCUG 9565, NCTC 4837 (type strain)
131935	S. dysenteriae RKI00-04776, DSM 103303
134426	S. dysenteriae M158, 34, CIP 106191
134427	S. dysenteriae Bagdad 7/66, CIP 67.60
134428	S. dysenteriae 252, CIP 59.3
134431	S. dysenteriae Bagdad 5/66, CIP 67.59
134738	S. dysenteriae CIP 58.26, NCTC 9347
134739	S. dysenteriae 418/55, CIP 58.28
135177	S. dysenteriae 599-52, CIP 53.134, NCTC 9345
135203	S. dysenteriae 43, CIP 106200
135301	S. dysenteriae 4219-50, CIP 52.120
135385	S. dysenteriae 54188, CIP 54.57
135580	S. dysenteriae CIP 54.51
135603	S. dysenteriae 589, CIP 57.42
135604	S. dysenteriae 3873-50, CIP 58.16, NCTC 9349
135606	S. dysenteriae 3307-53, 58, CIP 58.25, NCTC 9348
135718	S. dysenteriae 54921, CIP 56.17
135719	S. dysenteriae 54268, CIP 54.77
135721	S. dysenteriae 588, CIP 58.1
135722	S. dysenteriae 309, CIP 59.1
135723	S. dysenteriae 41, CIP 59.2
135724	S. dysenteriae 6270, CIP 59.4
136016	S. dysenteriae CIP 52.31
136061	S. dysenteriae 1048-50, CIP 52.122
137043	S. dysenteriae 4325, CIP 54.95
137393	S. dysenteriae Bucarest S, CIP 55.137
137398	S. dysenteriae CIP 82.34, ATCC 11835
138512	S. dysenteriae Bagdad 57/46, CIP 67.58
138544	S. dysenteriae Bucarest R, CIP 55.139
139001	S. dysenteriae Bucarest R, CIP 55.90
139003	S. dysenteriae CIP 53.127
139005	S. dysenteriae Norwich, CIP 52.27
139006	S. dysenteriae 9D, CIP 52.28
139007	S. dysenteriae CIP 52.30
139008	S. dysenteriae CIP 52.32
139009	S. dysenteriae 1012, CIP 54.49
139010	S. dysenteriae CIP 54.50
139012	S. dysenteriae 4388-50, CIP 58.15, NCTC 9350
139013	S. dysenteriae 1046-50, CIP 52.121
139014	S. dysenteriae CIP 52.123, NCTC 9763
139015	S. dysenteriae 1768-53, CIP 53.135
139017	S. dysenteriae 120, CIP 56.16
139018	S. dysenteriae CIP 56.33
139150	S. dysenteriae CIP 52.33
139306	S. dysenteriae 41, M183, CIP 106198
143352	S. dysenteriae CCUG 18713
145726	S. dysenteriae CCUG 29414
149515	S. dysenteriae CCUG 37887
149516	S. dysenteriae CCUG 37888
149517	S. dysenteriae CCUG 37889
150348	S. dysenteriae CCUG 39701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.75
125439	negative	94.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
41018	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
41018	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
41018	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	96.3

Spore formation

@ref	Spore formation	Confidence
125439		94.2

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
41018			Vietnam	VNM	Asia
41018	Human, Faeces	Saigon	Vietnam	VNM	Asia	1952-06-26

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
41018	3	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID
66792	Shigella dysenteriae strain CIP53.136	contig	622.135	622

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shigella dysenteriae strain CIP53.136
PATRIC: 622.135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.20	no
125439	motility	BacteriaNetⓘ	yes	64.90	no
125439	gram_stain	BacteriaNetⓘ	negative	94.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	96.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shigella dysenteriae strain CIP53.136
PATRIC: 622.135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	93.43	no
125438	spore-forming	spore-formingⓘ	no	89.95	no
125438	aerobic	aerobicⓘ	no	75.54	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	52.80	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41018	Collection of Institut Pasteur ; Curators of the CIP; CIP 53.136
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us