Strain identifier
BacDive ID: 139018
Type strain: 
Species: Shigella dysenteriae
Strain history: 1956, S. Rubinsten: strain 7
NCBI tax ID(s): 622 (species)
version 8.1 (current version)
General
@ref: 41020
BacDive-ID: 139018
keywords: genome sequence, Bacteria, mesophilic
description: Shigella dysenteriae CIP 56.33 is a mesophilic bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 622
- Matching level: species
strain history
- @ref: 41020
- history: 1956, S. Rubinsten: strain 7
doi: 10.13145/bacdive139018.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Shigella
- species: Shigella dysenteriae
- full scientific name: Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus dysentericus
@ref: 41020
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Shigella
species: Shigella dysenteriae
type strain: no
Culture and growth conditions
culture medium
- @ref: 41020
- name: MEDIUM 72- for trypto casein soja agar
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
culture temp
- @ref: 41020
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 41020
- geographic location: Addis-Abeba
- country: Ethiopia
- origin.country: ETH
- continent: Africa
Sequence information
Genome sequences
- @ref: 66792
- description: Shigella dysenteriae strain CIP56.33
- accession: 622.145
- assembly level: wgs
- database: patric
- NCBI tax ID: 622
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 97.946 | no |
| anaerobic | no | 93.795 | no |
| halophile | no | 91.28 | no |
| spore-forming | no | 95.008 | no |
| glucose-util | yes | 90.664 | no |
| thermophile | no | 99.08 | yes |
| flagellated | no | 91.072 | no |
| aerobic | yes | 72.359 | no |
| motile | no | 52.113 | no |
| glucose-ferment | yes | 92.503 | no |
External links
@ref: 41020
culture collection no.: CIP 56.33
straininfo link
- @ref: 95606
- straininfo: 70120
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41020 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.33 | Collection of Institut Pasteur (CIP 56.33) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 95606 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID70120.1 |