Name: Oceanobacillus sojae Y27
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1379

Type strain:

Species: Oceanobacillus sojae

Strain Designation: Y27

Culture col. no.: DSM 23151, CIP 109918, JCM 15792, NBRC 105379, NCIMB 14542, NRRL B-59181, KCTC 13887

Strain history: CIP <- 2008, T. Tominaga, Saitama Ind. Technol. Cent. North Inst., Saitama, Japan: strain Y27

NCBI tax ID(s): 582851 (species)

SI-ID 364728

CIP 109918, NRRL B-59181, JCM 15792, NBRC 105379, NCIMB 14542, DSM 23151

Special Collections

Other strains from Oceanobacillus sojae

Section

Oceanobacillus sojae Y27 is a facultative anaerobe, spore-forming, motile bacterium that was isolated from surface of soy sauce production equipment.

motile
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Oceanobacillus*
	Species	**Oceanobacillus sojae**
	Full Scientific Name (LPSN)	Oceanobacillus sojae corrig. Tominaga et al. 2009

Synonym

Oceanobacillus soja

Information on morphological and physiological properties Morphology

[Ref.: #122650]	Gram stain	positive

[Ref.: #122650]	Cell shape	rod-shaped

[Ref.: #122650]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16735]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16735]

Culture medium growth

[Ref.: #16735]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16735]

Culture medium composition

expand / minimize

[Ref.: #37892]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #37892]

Culture medium growth

[Ref.: #37892]

Culture medium composition

expand / minimize

[Ref.: #122650]

Culture medium

CIP Medium 29

[Ref.: #122650]

Culture medium growth

[Ref.: #122650]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16735]	growth	30 °C
[Ref.: #37892]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122650]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]

Ability of spore formation

yes Confidence in %91.01

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122650]		nitrate ChEBI	-	reduction
[Ref.: #122650]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122650]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122650]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122650]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122650]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122650]	12218	-	+	+	+	-	+	-	-	+	+	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16735]	Sample type/isolated from	surface of soy sauce production equipment
[Ref.: #16735]	Country	Japan
[Ref.: #16735]	Country ISO 3 Code	JPN
[Ref.: #16735]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface of soy sauce production equipment
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #122650]	Sample type/isolated from	Surface of equiment in food plant
[Ref.: #122650]	Country	Japan
[Ref.: #122650]	Country ISO 3 Code	JPN
[Ref.: #122650]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Engineered	#Industrial	#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB473561 (>99% sequence identity) for Oceanobacillus sojae from Microbeatlas

Aquatic Samples	7
Soil Samples	16
Animal Samples	40
Plant Samples	42
Total Samples	105

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16735]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122650]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16735]	Oceanobacillus sojae gene for 16S ribosomal RNA, partial sequence	AB473561	1518	GenBank ENA	582851 tax ID
[Ref.: #20218]	Oceanobacillus sojae gene for 16S rRNA, partial sequence, strain: NBRC 105379	AB682253	1488	GenBank ENA	582851 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceanobacillus sojae NBRC 105379	GCA_007991515	contig	GenBank ENA	582851 tax ID	*
[Ref.: #66792]	Oceanobacillus sojae strain NBRC 105379	582851.8	wgs	PATRIC	582851 tax ID	*

[Ref.: #16735]	GC-content	38.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	38 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oceanobacillus sojae strain NBRC 105379 PATRIC: 582851.8
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.949	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.721	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.01	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	51.771	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.714	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.918	no

Availability in culture collections External links

[Ref.: #16735]

Culture collection no.

DSM 23151, CIP 109918, JCM 15792, NBRC 105379, NCIMB 14542, NRRL B-59181, KCTC 13887

[Ref.: #71030]

SI-ID 364728

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanobacillus aidingensis sp. nov., a moderately halophilic bacterium.	Liu W, Yang SS	Antonie Van Leeuwenhoek	10.1007/s10482-014-0128-1	2014	*
Phylogeny	Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan.	Tominaga T, An SY, Oyaizu H, Yokota A	J Gen Appl Microbiol	10.2323/jgam.55.225	2009	*

References

#16735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23151

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37892 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71030

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364728.1 )

#122650 Collection of Institut Pasteur ; Curators of the CIP; CIP 109918
* These data were automatically processed and therefore are not curated

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Oceanobacillus sojae strain NBRC 105379

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