Pseudomonas marginalis (CIP 103779, ATCC 13888, ICMP 8661)

Name: Pseudomonas marginalis (CIP 103779, ATCC 13888, ICMP 8661)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137648

Type strain

Strain Designation PP-5

Culture col. no. CIP 103779 ATCC 13888 ICMP 8661 NCPPB 805 LMG 5043 3 more

NCBI tax ID(s) 298

Special Collections JCM CIP

History K. Komagata <-- R. Hugh 1044 <-- ATCC 13888 <-- R. S. Dickey PP-5. CIP <- 1993, ATCC <- R.S. Dickey: strain PP-5

Links

Pseudomonas marginalis PP-5 is a bacterium of the family Pseudomonadaceae.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 4155

LMG 5043,ATCC 13888,NCPPB 805,CIP 103779,ICMP 8661,CFBP 3302

@ref 20215

Last LPSN update 2026-02-09 11:32:56

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas marginalis

Full scientific name Pseudomonas marginalis (Brown 1918) Stevens 1925 (Approved Lists 1980)

Synonyms (2)

Pseudomonas panacis
"Bacterium marginale"

BacDive ID	Other strains from **Pseudomonas marginalis** (12)	Type strain
12863	P. marginalis CIBP, DSM 13124, ATCC 10844, NCPPB 667, CCUG ... (type strain)
12864	P. marginalis 289, 292, DSM 50275
141377	P. marginalis CCUG 1318, NCPPB 247
145155	P. marginalis CCUG 27768, IFO 3925, NRRL B-981, NBRC 3925
156505	P. marginalis CCUG 62222
157434	P. marginalis IMI 346520
157435	P. marginalis IMI 347520
157436	P. marginalis IMI 347524
157437	P. marginalis IMI 347528
161361	P. marginalis JCM 13460, ATCC 13889, CFBP 2038, ICMP 5709, ...
161408	P. marginalis JCM 13886, ATCC 13890, ICMP 8660, LMG 5042, ...
161409	P. marginalis JCM 13887, ATCC 13891, ICMP 8662, LMG 5044, ...

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38468	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
38468	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
38468	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
38468			Long Island, New-York	USA	USA	North America
67770	Tuber of parsnip (Pastinaca sativa)	Pastinaca sativa	Long Island, NY	USA	USA	North America
38468	Plant, Parsnip tuber		Long Island, New York	United States of America	USA	North America	1959

Taxonmaps

69479

Global distribution of 16S sequence LC507978 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	976
Soil Samples	555
Animal Samples	2173
Plant Samples	1759
Total Samples	5463

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
38468	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas marginalis JCM 13459 gene for 16S rRNA, partial sequence	LC507978	1459		298

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38468	Collection of Institut Pasteur ; Curators of the CIP; CIP 103779
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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