Pseudomonas marginalis (DSM 50275, 289, 292)

Name: Pseudomonas marginalis (DSM 50275, 289, 292)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12864

Type strain

Strain Designation 289, 292

Culture col. no. DSM 50275 289 292

NCBI tax ID(s) 298

Special Collections DSMZ

Links

Pseudomonas marginalis 289 is a mesophilic plant pathogen that was isolated from plant Cichorium intybus.

mesophilic plant pathogen 16S sequence

Name and taxonomic classification

SI-ID 50939

DSM 50275

@ref 20215

Last LPSN update 2025-12-16 09:49:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas marginalis

Full scientific name Pseudomonas marginalis (Brown 1918) Stevens 1925 (Approved Lists 1980)

Synonyms (2)

Pseudomonas panacis
"Bacterium marginale"

BacDive ID	Other strains from **Pseudomonas marginalis** (12)	Type strain
12863	P. marginalis CIBP, DSM 13124, ATCC 10844, NCPPB 667, CCUG ... (type strain)
137648	P. marginalis PP-5, CIP 103779, ATCC 13888, ICMP 8661, ...
141377	P. marginalis CCUG 1318, NCPPB 247
145155	P. marginalis CCUG 27768, IFO 3925, NRRL B-981, NBRC 3925
156505	P. marginalis CCUG 62222
157434	P. marginalis IMI 346520
157435	P. marginalis IMI 347520
157436	P. marginalis IMI 347524
157437	P. marginalis IMI 347528
161361	P. marginalis JCM 13460, ATCC 13889, CFBP 2038, ICMP 5709, ...
161408	P. marginalis JCM 13886, ATCC 13890, ICMP 8660, LMG 5042, ...
161409	P. marginalis JCM 13887, ATCC 13891, ICMP 8662, LMG 5044, ...

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12694	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12694	positive	growth	28	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
12694	+	-	-	+	-	+	+	-	+	-	+	+	+	-	+	+	-	+	+	-	+
12694	+	-	-	+	-	+	+	-	+	-	+	+	+	-	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
12694	plant Cichorium intybus	Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence LC409077 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	976
Soil Samples	555
Animal Samples	2173
Plant Samples	1759
Total Samples	5463

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
12694		1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12694	Pseudomonas marginalis ATCC 10844 gene for 16S ribosomal RNA, partial sequence	LC409077	1418		298

Genome-based predictions

Literature

References

#12694	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50275
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us