Name: Elizabethkingia meningoseptica G4071
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137583

Type strain:

Species: Elizabethkingia meningoseptica

Strain Designation: G4071, 13-78

Culture col. no.: CIP 78.30, NCTC 11305, DSM 103689

Strain history: CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 13-78 <- R. Minck, Strasbourg Hosp., France: strain B 38593, Flavobacterium meningosepticum

NCBI tax ID(s): 238 (species)

SI-ID 54003

CCUG 16476, NCTC 11305, CIP 78.30, DSM 103689, CCUG 69494

Special Collections

CIP
DSMZ

Other strains from Elizabethkingia meningoseptica

Section

When using BacDive for research please cite our paper

Elizabethkingia meningoseptica G4071 is an obligate aerobe, mesophilic, Gram-negative human pathogen that was isolated from Tracheal exudate.

Gram-negative
rod-shaped
human pathogen
mesophilic
obligate aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Elizabethkingia*
	Species	**Elizabethkingia meningoseptica**
	Full Scientific Name (LPSN)	Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

	Synonym	Chryseobacterium meningosepticum
	Synonym	Flavobacterium meningosepticum

Information on morphological and physiological properties Morphology

[Ref.: #38389]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.5
[Ref.: #125438]	Gram stain	negative Confidence in %99

[Ref.: #38389]	Cell shape	rod-shaped

[Ref.: #38389]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %90.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38389]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #38389]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #68456]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #68456]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #68456]

Culture medium growth

[Ref.: #68456]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38389]

Culture medium

CIP Medium 3

[Ref.: #38389]

Culture medium growth

[Ref.: #38389]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38389]

Culture medium

CIP Medium 72

[Ref.: #38389]

Culture medium growth

[Ref.: #38389]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #38389]			growth	30 °C
[Ref.: #68456]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #38389]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %93.7

[Ref.: #125439]	Ability of spore formation	no Confidence in %95.9
[Ref.: #125438]	Ability of spore formation	no Confidence in %90.2

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #38389]		nitrate ChEBI	-	reduction
[Ref.: #38389]		nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #38389]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #38389]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #38389]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #38389]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #38389]	13394	-	+	-	+	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68456]	Sample type/isolated from	Tracheal exudate
[Ref.: #68456]	Geographic location (country and/or sea, region)	Strasbourg
[Ref.: #68456]	Country	France
[Ref.: #68456]	Country ISO 3 Code	FRA
[Ref.: #68456]	Continent	Europe
[Ref.: #68456]	Geographic location	48.5800°/7.7500°

[Ref.: #38389]	Sample type/isolated from	Human, Tracheal exudate
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #68456]	Pathogenicity (human)	yes
[Ref.: #68456]	Pathogenicity (animal)	yes
[Ref.: #68456]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #38389]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Elizabethkingia miricola NCTC11305	GCA_900447195	contig	GenBank ENA	172045 tax ID	*
[Ref.: #66792]	Elizabethkingia meningoseptica strain NCTC11305	238.86	wgs	PATRIC	238 tax ID	*
[Ref.: #66792]	Elizabethkingia meningoseptica NCTC 11305	2823255045	draft	JGI IMG/M	238 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Elizabethkingia meningoseptica strain NCTC11305 PATRIC: 238.86
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.403	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.2	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.473	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Elizabethkingia miricola NCTC11305 NCBI: GCA_900447195
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	72.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93.7

Availability in culture collections External links

[Ref.: #38389]

Culture collection no.

CIP 78.30, NCTC 11305, DSM 103689

[Ref.: #94442]

SI-ID 54003

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38389 Collection of Institut Pasteur ; Curators of the CIP; CIP 78.30

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#68456

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103689

#94442

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID54003.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Elizabethkingia meningoseptica strain NCTC11305

Elizabethkingia miricola NCTC11305

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