Elizabethkingia meningoseptica (CIP 60.58, ATCC 13254, NCTC 10585)

Name: Elizabethkingia meningoseptica (CIP 60.58, ATCC 13254, NCTC 10585)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138466

Type strain

Culture col. no. CIP 60.58 ATCC 13254 NCTC 10585

NCBI tax ID(s) 238

Special Collections CIP

History CIP <- 1960, E.O. King, CDC: strain 422, Flavobacterium meningosepticum CIP <- 1960, E.O. King, CDC: strain 422, Flavobacterium meningosepticum

Links

Elizabethkingia meningoseptica CIP 60.58 is an obligate aerobe, Gram-negative, rod-shaped bacterium of the family Weeksellaceae.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 7819

LMG 12280,ATCC 13254,CCUG 4310,NCTC 10585,CIP 60.58,CCUG 69493

@ref 20215

Last LPSN update 2026-05-29 08:39:16

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Elizabethkingia

Species Elizabethkingia meningoseptica

Full scientific name Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

Synonyms (2)

Flavobacterium meningosepticum
Chryseobacterium meningosepticum

BacDive ID	Other strains from **Elizabethkingia meningoseptica** (75)	Type strain
5506	E. meningoseptica 14 (serotype A), DSM 2800, ATCC 13253, IAM ... (type strain)
134620	E. meningoseptica CIP 60.59, ATCC 13255, NCTC 10586
134866	E. meningoseptica 40-78, CIP 79.5, NCTC 11306
134960	E. meningoseptica 34.87, CIP 102787
135151	E. meningoseptica 371.81, CIP 103064
135787	E. meningoseptica 30-78, CIP 78.45
135804	E. meningoseptica 37-75, CIP 79.29, NCTC 11309, CCUG 16478
135812	E. meningoseptica 58-80, CIP 80.33, NCTC 11381
136007	E. meningoseptica CIP 101999
136266	E. meningoseptica AmMS 250, CIP 104057, ATCC 49470
136559	E. meningoseptica PINT, CIP 106814
136963	E. meningoseptica CIP 108652, NTU 870424-IL
136964	E. meningoseptica LDVH AR107, CIP 108654
137541	E. meningoseptica CIP 78.7, NCTC 10587, CCUG 4309
137542	E. meningoseptica 8388, CCUG 4308, CIP 78.8, NCTC 10588
137543	E. meningoseptica 8707, CIP 78.9, NCTC 10589, CCUG 4218, ATCC ...
137583	E. meningoseptica G4071, 13-78, CIP 78.30, NCTC 11305, DSM ...
137592	E. meningoseptica 260-79, CIP 79.35
137696	E. meningoseptica 28-80, CIP 80.32, NCTC 11379
137803	E. meningoseptica 590.76, CIP 102962
139439	E. meningoseptica 928-82, CIP 111048
139441	E. meningoseptica 393-79, CIP 111043
139443	E. meningoseptica 929-82, CIP 111049
141324	E. meningoseptica CCUG 855
141540	E. meningoseptica CCUG 2800 A
141611	E. meningoseptica CCUG 3645
141862	E. meningoseptica CCUG 7924
142086	E. meningoseptica CCUG 10540
142491	E. meningoseptica CCUG 12664 A
142706	E. meningoseptica CCUG 14224, LMG 12874
142707	E. meningoseptica CCUG 14225
142959	E. meningoseptica CCUG 15909
143452	E. meningoseptica CCUG 19227
143630	E. meningoseptica CCUG 20660
143860	E. meningoseptica CCUG 21611
144190	E. meningoseptica CCUG 23419
144255	E. meningoseptica CCUG 23973
144372	E. meningoseptica CCUG 24787
144555	E. meningoseptica CCUG 25659
144656	E. meningoseptica CCUG 26117, ATCC 51720
145442	E. meningoseptica CCUG 28552
145770	E. meningoseptica CCUG 29546 A
145842	E. meningoseptica CCUG 29764
145854	E. meningoseptica CCUG 29795
146157	E. meningoseptica CCUG 30473
146691	E. meningoseptica CCUG 31955
146906	E. meningoseptica CCUG 32413
146971	E. meningoseptica CCUG 32575
147012	E. meningoseptica CCUG 32643
147386	E. meningoseptica CCUG 33506
147645	E. meningoseptica CCUG 33943
147700	E. meningoseptica CCUG 34034
147839	E. meningoseptica CCUG 34344
147952	E. meningoseptica CCUG 34573
148581	E. meningoseptica CCUG 35667
148801	E. meningoseptica CCUG 35954
149199	E. meningoseptica CCUG 37255
149550	E. meningoseptica CCUG 37945
150038	E. meningoseptica CCUG 38902
150211	E. meningoseptica CCUG 39291
150266	E. meningoseptica CCUG 39437
150478	E. meningoseptica CCUG 41404
150611	E. meningoseptica CCUG 41754
150792	E. meningoseptica CCUG 42353
150888	E. meningoseptica CCUG 42630
153904	E. meningoseptica CCUG 51574
157096	E. meningoseptica CCUG 69507
157097	E. meningoseptica CCUG 69508
157098	E. meningoseptica CCUG 69509
157104	E. meningoseptica CCUG 69515
157107	E. meningoseptica CCUG 69518
157109	E. meningoseptica CCUG 69520
157110	E. meningoseptica CCUG 69521
157113	E. meningoseptica CCUG 69524
176412	E. meningoseptica Dres_ElizSp_24, DSM 107744

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
39810	negative	rod-shaped
125439	negative		98.622
125438			91.5
125438	negative		98

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
39810	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
39810	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
39810	positive	growth	30
39810	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
39810	obligate aerobe
125439	obligate aerobe	93.82

Spore formation

@ref	Spore formation	Confidence
125439		98.33
125438		90.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
39810	16947 ChEBI	citrate	-	carbon source
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
39810	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
39810	17632 ChEBI	nitrate	-	reduction
39810	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
39810	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
39810	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
39810	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
39810	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
39810	ornithine decarboxylase	-	4.1.1.17
39810	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
39810	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
39810	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
39810	not determinedn.d.	+/-	-	+/-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	-	+	-	+	-	+/-	+	+	+	-	+	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
39810			Florida	USA	USA	North America
39810	Human, Infant, blood	Homo sapiens	Florida	United States of America	USA	North America	1950

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39810	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM90015698v1 assembly for Elizabethkingia anophelis	scaffold	GCA_900156985	1117645.183	2850378244	1117645	72.84

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
124043	Chryseobacterium meningosepticum partial 16S rRNA gene, strain ATCC 13254	AJ704541	1449	238
124043	Elizabethkingia meningoseptica strain ATCC 13254 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014568	566	238
124043	Chryseobacterium meningosepticum strain LMG 12280 16S ribosomal RNA gene, partial sequence.	AY468480	1442	238

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM90015698v1 assembly for Elizabethkingia anophelis
BV-BRC: 1117645.183

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.82	no
125439	motility	BacteriaNetⓘ	no	78.96	no
125439	gram_stain	BacteriaNetⓘ	negative	98.62	no
125439	spore_formation	BacteriaNetⓘ	no	98.33	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Elizabethkingia anophelis Illumina sequencing of Elizabethkingia anophelis CIP60.58
NCBI: GCA_900156985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	97.64	no
125438	aerobic	aerobicⓘ	yes	89.78	yes
125438	spore-forming	spore-formingⓘ	no	90.50	no
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	The Chryseobacterium meningosepticum PafA enzyme: prototype of a new enzyme family of prokaryotic phosphate-irrepressible alkaline phosphatases?	Berlutti F, Passariello C, Selan L, Thaller MC, Rossolini GM	Microbiology (Reading)	10.1099/00221287-147-10-2831	2001
Phylogeny	Molecular and biochemical heterogeneity of class B carbapenem-hydrolyzing beta-lactamases in Chryseobacterium meningosepticum.	Bellais S, Aubert D, Naas T, Nordmann P	Antimicrob Agents Chemother	10.1128/AAC.44.7.1878-1886.2000	2000
Enzymology	Cloning of a Chryseobacterium (Flavobacterium) meningosepticum chromosomal gene (blaA(CME)) encoding an extended-spectrum class A beta-lactamase related to the Bacteroides cephalosporinases and the VEB-1 and PER beta-lactamases.	Rossolini GM, Franceschini N, Lauretti L, Caravelli B, Riccio ML, Galleni M, Frere JM, Amicosante G	Antimicrob Agents Chemother	10.1128/AAC.43.9.2193	1999
Metabolism	Carbapenemases of Chryseobacterium (Flavobacterium) meningosepticum: distribution of blaB and characterization of a novel metallo-beta-lactamase gene, blaB3, in the type strain, NCTC 10016.	Woodford N, Palepou MF, Babini GS, Holmes B, Livermore DM	Antimicrob Agents Chemother	10.1128/AAC.44.6.1448-1452.2000	2000
Phylogeny	DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.	Holmes B, Steigerwalt AG, Nicholson AC.	Int J Syst Evol Microbiol	10.1099/ijs.0.054353-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39810	Collection of Institut Pasteur ; Curators of the CIP; CIP 60.58
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Elizabethkingia meningoseptica (CIP 60.58, ATCC 13254, NCTC 10585)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900156985

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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