Strain identifier

BacDive ID: 138466

Type strain: No

Species: Elizabethkingia meningoseptica

Strain history: CIP <- 1960, E.O. King, CDC: strain 422, Flavobacterium meningosepticum

NCBI tax ID(s): 238 (species)

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General

@ref: 39810

BacDive-ID: 138466

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic

description: Elizabethkingia meningoseptica CIP 60.58 is an obligate aerobe, mesophilic bacterium of the family Weeksellaceae.

NCBI tax id

  • NCBI tax id: 238
  • Matching level: species

strain history

@refhistory
398101960, E.O. King, CDC: strain 422, Flavobacterium meningosepticum
39810CIP <- 1960, E.O. King, CDC: strain 422, Flavobacterium meningosepticum

doi: 10.13145/bacdive138466.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Elizabethkingia
  • species: Elizabethkingia meningoseptica
  • full scientific name: Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

  • synonyms

    @refsynonym
    20215Flavobacterium meningosepticum
    20215Chryseobacterium meningosepticum

@ref: 39810

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Elizabethkingia

species: Elizabethkingia meningoseptica

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no92.676
6948099.964negative
39810nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39810MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
39810CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
39810positivegrowth30mesophilic
39810nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39810
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.988

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371erythritol-builds acid from17113
39810citrate-carbon source16947
39810esculin+hydrolysis4853
39810nitrate-reduction17632
39810nitrite-reduction16301

metabolite production

  • @ref: 39810
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
39810oxidase+
39810alcohol dehydrogenase-1.1.1.1
39810catalase+1.11.1.6
39810lysine decarboxylase-4.1.1.18
39810ornithine decarboxylase-4.1.1.17
39810urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39810--------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39810+/--+/--------+++----+----+-+-+/-+++-+---+--+----+-----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39810FloridaUSAUSANorth America
39810FloridaUnited States of AmericaUSANorth AmericaHuman, Infant, blood1950

Safety information

risk assessment

  • @ref: 39810
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Elizabethkingia anophelis Illumina sequencing of Elizabethkingia anophelis CIP60.58GCA_900156985scaffoldncbi1117645
66792Elizabethkingia anophelis strain Illumina sequencing of Elizabethkingia anophelis CIP60.581117645.183wgspatric1117645

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.579no
flagellatedno96.269no
gram-positiveno97.916no
anaerobicno99.728no
aerobicyes92.009no
halophileno94.303no
spore-formingno94.97no
thermophileno99.33yes
glucose-utilyes89.154no
glucose-fermentno92.563no

External links

@ref: 39810

culture collection no.: CIP 60.58, ATCC 13254, NCTC 10585

straininfo link

  • @ref: 95186
  • straininfo: 7819

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology10471563Cloning of a Chryseobacterium (Flavobacterium) meningosepticum chromosomal gene (blaA(CME)) encoding an extended-spectrum class A beta-lactamase related to the Bacteroides cephalosporinases and the VEB-1 and PER beta-lactamases.Rossolini GM, Franceschini N, Lauretti L, Caravelli B, Riccio ML, Galleni M, Frere JM, Amicosante GAntimicrob Agents Chemother10.1128/AAC.43.9.21931999Base Sequence, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Escherichia coli/enzymology, Flavobacterium/enzymology/*genetics, Genetic Vectors, Molecular Sequence Data, Plasmids/genetics, Restriction Mapping, beta-Lactamases/*classification/*genetics/isolation & purificationGenetics
Metabolism10817691Carbapenemases of Chryseobacterium (Flavobacterium) meningosepticum: distribution of blaB and characterization of a novel metallo-beta-lactamase gene, blaB3, in the type strain, NCTC 10016.Woodford N, Palepou MF, Babini GS, Holmes B, Livermore DMAntimicrob Agents Chemother10.1128/AAC.44.6.1448-1452.20002000Amino Acid Sequence, *Bacterial Proteins, Flavobacterium/*enzymology/*genetics, *Genes, Bacterial, Metalloproteins/genetics/metabolism, Molecular Sequence Data, beta-Lactamases/*genetics/metabolismGenetics
Phylogeny10858348Molecular and biochemical heterogeneity of class B carbapenem-hydrolyzing beta-lactamases in Chryseobacterium meningosepticum.Bellais S, Aubert D, Naas T, Nordmann PAntimicrob Agents Chemother10.1128/AAC.44.7.1878-1886.20002000Amino Acid Sequence, Base Sequence, Carbapenems/*metabolism, Cloning, Molecular, DNA, Bacterial/analysis, Flavobacterium/enzymology/*genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, Sequence Homology, Amino Acid, beta-Lactam Resistance/*genetics, beta-Lactamases/classification/*genetics/metabolismEnzymology
Enzymology11577161The Chryseobacterium meningosepticum PafA enzyme: prototype of a new enzyme family of prokaryotic phosphate-irrepressible alkaline phosphatases?Berlutti F, Passariello C, Selan L, Thaller MC, Rossolini GMMicrobiology (Reading)10.1099/00221287-147-10-28312001Alkaline Phosphatase/chemistry/*genetics/isolation & purification/metabolism, Amino Acid Sequence, Bacterial Proteins, Cloning, Molecular, Enzyme Repression, Flavobacterium/*enzymology/genetics, Molecular Sequence Data, Periplasm/enzymology, Phosphates/pharmacology, Phylogeny, Sequence Analysis, DNAPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39810Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.58Collection of Institut Pasteur (CIP 60.58)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95186Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7819.1