Elizabethkingia meningoseptica (CCUG 4308, CIP 78.8, NCTC 10588)

Name: Elizabethkingia meningoseptica (CCUG 4308, CIP 78.8, NCTC 10588)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137542

Type strain

Strain Designation 8388

Culture col. no. CCUG 4308 CIP 78.8 NCTC 10588 8388

NCBI tax ID(s) 238

Special Collections CCUG CIP

History CIP <- 1978, NCTC, Flavobacterium meningosepticum <- 1968, R.E. Weaver, CDC: strain 8388 <- 1962, New York State Dept. Hlth, USA

Links

Elizabethkingia meningoseptica 8388 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from Human blood.

Gram-negative rod-shaped obligate aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 7770

LMG 12871,CCUG 4308,NCTC 10588,CIP 78.8

@ref 20215

Last LPSN update 2026-05-29 08:39:03

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Elizabethkingia

Species Elizabethkingia meningoseptica

Full scientific name Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

Synonyms (2)

Flavobacterium meningosepticum
Chryseobacterium meningosepticum

BacDive ID	Other strains from **Elizabethkingia meningoseptica** (75)	Type strain
5506	E. meningoseptica 14 (serotype A), DSM 2800, ATCC 13253, IAM ... (type strain)
134620	E. meningoseptica CIP 60.59, ATCC 13255, NCTC 10586
134866	E. meningoseptica 40-78, CIP 79.5, NCTC 11306
134960	E. meningoseptica 34.87, CIP 102787
135151	E. meningoseptica 371.81, CIP 103064
135787	E. meningoseptica 30-78, CIP 78.45
135804	E. meningoseptica 37-75, CIP 79.29, NCTC 11309, CCUG 16478
135812	E. meningoseptica 58-80, CIP 80.33, NCTC 11381
136007	E. meningoseptica CIP 101999
136266	E. meningoseptica AmMS 250, CIP 104057, ATCC 49470
136559	E. meningoseptica PINT, CIP 106814
136963	E. meningoseptica CIP 108652, NTU 870424-IL
136964	E. meningoseptica LDVH AR107, CIP 108654
137541	E. meningoseptica CIP 78.7, NCTC 10587, CCUG 4309
137543	E. meningoseptica 8707, CIP 78.9, NCTC 10589, CCUG 4218, ATCC ...
137583	E. meningoseptica G4071, 13-78, CIP 78.30, NCTC 11305, DSM ...
137592	E. meningoseptica 260-79, CIP 79.35
137696	E. meningoseptica 28-80, CIP 80.32, NCTC 11379
137803	E. meningoseptica 590.76, CIP 102962
138466	E. meningoseptica CIP 60.58, ATCC 13254, NCTC 10585
139439	E. meningoseptica 928-82, CIP 111048
139441	E. meningoseptica 393-79, CIP 111043
139443	E. meningoseptica 929-82, CIP 111049
141324	E. meningoseptica CCUG 855
141540	E. meningoseptica CCUG 2800 A
141611	E. meningoseptica CCUG 3645
141862	E. meningoseptica CCUG 7924
142086	E. meningoseptica CCUG 10540
142491	E. meningoseptica CCUG 12664 A
142706	E. meningoseptica CCUG 14224, LMG 12874
142707	E. meningoseptica CCUG 14225
142959	E. meningoseptica CCUG 15909
143452	E. meningoseptica CCUG 19227
143630	E. meningoseptica CCUG 20660
143860	E. meningoseptica CCUG 21611
144190	E. meningoseptica CCUG 23419
144255	E. meningoseptica CCUG 23973
144372	E. meningoseptica CCUG 24787
144555	E. meningoseptica CCUG 25659
144656	E. meningoseptica CCUG 26117, ATCC 51720
145442	E. meningoseptica CCUG 28552
145770	E. meningoseptica CCUG 29546 A
145842	E. meningoseptica CCUG 29764
145854	E. meningoseptica CCUG 29795
146157	E. meningoseptica CCUG 30473
146691	E. meningoseptica CCUG 31955
146906	E. meningoseptica CCUG 32413
146971	E. meningoseptica CCUG 32575
147012	E. meningoseptica CCUG 32643
147386	E. meningoseptica CCUG 33506
147645	E. meningoseptica CCUG 33943
147700	E. meningoseptica CCUG 34034
147839	E. meningoseptica CCUG 34344
147952	E. meningoseptica CCUG 34573
148581	E. meningoseptica CCUG 35667
148801	E. meningoseptica CCUG 35954
149199	E. meningoseptica CCUG 37255
149550	E. meningoseptica CCUG 37945
150038	E. meningoseptica CCUG 38902
150211	E. meningoseptica CCUG 39291
150266	E. meningoseptica CCUG 39437
150478	E. meningoseptica CCUG 41404
150611	E. meningoseptica CCUG 41754
150792	E. meningoseptica CCUG 42353
150888	E. meningoseptica CCUG 42630
153904	E. meningoseptica CCUG 51574
157096	E. meningoseptica CCUG 69507
157097	E. meningoseptica CCUG 69508
157098	E. meningoseptica CCUG 69509
157104	E. meningoseptica CCUG 69515
157107	E. meningoseptica CCUG 69518
157109	E. meningoseptica CCUG 69520
157110	E. meningoseptica CCUG 69521
157113	E. meningoseptica CCUG 69524
176412	E. meningoseptica Dres_ElizSp_24, DSM 107744

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
38080	negative	rod-shaped
125439	negative		96.784
125438			92
125438	negative		97.955

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
38080	MEDIUM 3 - Columbia agar	Columbia agar (39.000 g);distilled water (1000.000 ml)
38080	CIP Medium 3		Medium recipe at CIP
38080	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
38080	positive	growth	30

Physiology and metabolism

Oxygen tolerance

38080

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.158
125438		91

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
38080	17632 ChEBI	nitrate	-	reduction
38080	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
38080	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
38080	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
38080	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
38080	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
38080	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
44729	Human blood	Homo sapiens	1962	New York	USA	USA	North America
38080	Human, Child, cerebrospinal fluid	Homo sapiens						1962

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
38080	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	34410_G01 assembly for Elizabethkingia anophelis NCTC10588	contig	GCA_900447425	238.88	1117645	74.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 34410_G01 assembly for Elizabethkingia anophelis NCTC10588
BV-BRC: 238.88

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	96.78	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.14	no
125439	motility	BacteriaNetⓘ	no	76.86	no
125439	spore_formation	BacteriaNetⓘ	no	96.16	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Elizabethkingia meningoseptica strain NCTC10588
PATRIC: 238.88

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	no
125438	anaerobic	anaerobicⓘ	no	98.01	yes
125438	spore-forming	spore-formingⓘ	no	91.00	no
125438	aerobic	aerobicⓘ	yes	89.64	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38080	Collection of Institut Pasteur ; Curators of the CIP; CIP 78.8
#44729	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4308
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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