Name: Elizabethkingia meningoseptica 8388
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137542

Type strain:

Species: Elizabethkingia meningoseptica

Strain Designation: 8388

Culture col. no.: CCUG 4308, CIP 78.8, NCTC 10588

Strain history: CIP <- 1978, NCTC, Flavobacterium meningosepticum <- 1968, R.E. Weaver, CDC: strain 8388 <- 1962, New York State Dept. Hlth, USA

NCBI tax ID(s): 238 (species)

SI-ID 7770

LMG 12871, CCUG 4308, NCTC 10588, CIP 78.8

Other strains from Elizabethkingia meningoseptica

Section

Elizabethkingia meningoseptica 8388 is an obligate aerobe, mesophilic bacterium that was isolated from Human blood.

mesophilic
obligate aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Elizabethkingia*
	Species	**Elizabethkingia meningoseptica**
	Full Scientific Name (LPSN)	Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

	Synonym	Flavobacterium meningosepticum
	Synonym	Chryseobacterium meningosepticum

Information on morphological and physiological properties Morphology

[Ref.: #38080]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.971

[Ref.: #38080]	Cell shape	rod-shaped

[Ref.: #38080]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.921

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38080]

Culture medium

MEDIUM 3 - Columbia agar

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Culture medium growth

[Ref.: #38080]

Culture medium composition

expand / minimize

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Culture medium

CIP Medium 3

[Ref.: #38080]

Culture medium growth

[Ref.: #38080]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38080]

Culture medium

CIP Medium 72

[Ref.: #38080]

Culture medium growth

[Ref.: #38080]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #38080]			growth	30 °C

[Ref.: #38080]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #38080]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #38080]		nitrate ChEBI	-	reduction
[Ref.: #38080]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #38080]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #38080]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #38080]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #38080]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #38080]	13413	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44729]	Sample type/isolated from	Human blood
[Ref.: #44729]	Sampling date	1962
[Ref.: #44729]	Geographic location (country and/or sea, region)	New York
[Ref.: #44729]	Country	USA
[Ref.: #44729]	Country ISO 3 Code	USA
[Ref.: #44729]	Continent	North America

[Ref.: #38080]	Sample type/isolated from	Human, Child, cerebrospinal fluid
[Ref.: #38080]	Isolation date	1962
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #38080]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Elizabethkingia anophelis NCTC10588	GCA_900447425	contig	GenBank	1117645 tax ID	*
[Ref.: #66792]	Elizabethkingia meningoseptica strain NCTC10588	238.88	wgs	PATRIC	238 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Elizabethkingia meningoseptica strain NCTC10588 PATRIC: 238.88
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Elizabethkingia meningoseptica strain NCTC10588 PATRIC: 238.88
[Ref.: #69480]	motile	no	91.531	no
[Ref.: #69480]	gram-positive	no	97.909	no
[Ref.: #69480]	anaerobic	no	99.758	no
[Ref.: #69480]	aerobic	yes	90.863	no
[Ref.: #69480]	halophile	no	95.081	no
[Ref.: #69480]	spore-forming	no	94.747	no
[Ref.: #69480]	glucose-util	yes	87.592	no
[Ref.: #69480]	flagellated	no	96.378	no
[Ref.: #69480]	thermophile	no	99.331	yes
[Ref.: #69480]	glucose-ferment	no	91.265	no

Availability in culture collections External links

[Ref.: #38080]

Culture collection no.

CCUG 4308, CIP 78.8, NCTC 10588

[Ref.: #94413]

SI-ID 7770

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38080 Collection of Institut Pasteur ; Curators of the CIP; CIP 78.8
#44729 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4308

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94413

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7770.1 )

* These data were automatically processed and therefore are not curated

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Elizabethkingia meningoseptica strain NCTC10588

Elizabethkingia meningoseptica strain NCTC10588

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