Name: Elizabethkingia meningoseptica 8388
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137542

Type strain:

Species: Elizabethkingia meningoseptica

Strain Designation: 8388

Culture col. no.: CCUG 4308, CIP 78.8, NCTC 10588

Strain history: CIP <- 1978, NCTC, Flavobacterium meningosepticum <- 1968, R.E. Weaver, CDC: strain 8388 <- 1962, New York State Dept. Hlth, USA

NCBI tax ID(s): 238 (species)

SI-ID 7770

LMG 12871, CCUG 4308, NCTC 10588, CIP 78.8

Special Collections

CCUG
CIP

Other strains from Elizabethkingia meningoseptica

Section

Elizabethkingia meningoseptica 8388 is an obligate aerobe, Gram-negative bacterium that was isolated from Human blood.

Gram-negative
obligate aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Elizabethkingia*
	Species	**Elizabethkingia meningoseptica**
	Full Scientific Name (LPSN)	Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

	Synonym	Flavobacterium meningosepticum
	Synonym	Chryseobacterium meningosepticum

Information on morphological and physiological properties Morphology

[Ref.: #38080]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.955

[Ref.: #38080]	Cell shape	rod-shaped

[Ref.: #38080]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38080]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #38080]

Culture medium growth

[Ref.: #38080]

Culture medium composition

expand / minimize

[Ref.: #38080]

Culture medium

CIP Medium 3

[Ref.: #38080]

Culture medium growth

[Ref.: #38080]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #38080]

Culture medium

CIP Medium 72

[Ref.: #38080]

Culture medium growth

[Ref.: #38080]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #38080]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #38080]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #38080]		nitrate ChEBI	-	reduction
[Ref.: #38080]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #38080]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #38080]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #38080]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #38080]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #38080]	13413	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44729]	Sample type/isolated from	Human blood
[Ref.: #44729]	Sampling date	1962
[Ref.: #44729]	Geographic location (country and/or sea, region)	New York
[Ref.: #44729]	Country	USA
[Ref.: #44729]	Country ISO 3 Code	USA
[Ref.: #44729]	Continent	North America

[Ref.: #38080]	Sample type/isolated from	Human, Child, cerebrospinal fluid
[Ref.: #38080]	Isolation date	1962
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #38080]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Elizabethkingia anophelis NCTC10588	GCA_900447425	contig	GenBank ENA	1117645 tax ID	*
[Ref.: #66792]	Elizabethkingia meningoseptica strain NCTC10588	238.88	wgs	PATRIC	238 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Elizabethkingia meningoseptica strain NCTC10588 PATRIC: 238.88
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Elizabethkingia meningoseptica strain NCTC10588 PATRIC: 238.88
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.955	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.005	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.64	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	no

Availability in culture collections External links

[Ref.: #38080]

Culture collection no.

CCUG 4308, CIP 78.8, NCTC 10588

[Ref.: #94413]

SI-ID 7770

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38080 Collection of Institut Pasteur ; Curators of the CIP; CIP 78.8
#44729 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4308

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94413

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7770.1 )

* These data were automatically processed and therefore are not curated

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Elizabethkingia meningoseptica strain NCTC10588

Elizabethkingia meningoseptica strain NCTC10588

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