Strain identifier

BacDive ID: 137542

Type strain: No

Species: Elizabethkingia meningoseptica

Strain Designation: 8388

Strain history: CIP <- 1978, NCTC, Flavobacterium meningosepticum <- 1968, R.E. Weaver, CDC: strain 8388 <- 1962, New York State Dept. Hlth, USA

NCBI tax ID(s): 238 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 38080

BacDive-ID: 137542

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic

description: Elizabethkingia meningoseptica 8388 is an obligate aerobe, mesophilic bacterium that was isolated from Human blood.

NCBI tax id

  • NCBI tax id: 238
  • Matching level: species

strain history

  • @ref: 38080
  • history: CIP <- 1978, NCTC, Flavobacterium meningosepticum <- 1968, R.E. Weaver, CDC: strain 8388 <- 1962, New York State Dept. Hlth, USA

doi: 10.13145/bacdive137542.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Elizabethkingia
  • species: Elizabethkingia meningoseptica
  • full scientific name: Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

  • synonyms

    @refsynonym
    20215Flavobacterium meningosepticum
    20215Chryseobacterium meningosepticum

@ref: 38080

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Elizabethkingia

species: Elizabethkingia meningoseptica

strain designation: 8388

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.921
6948099.971negative
38080nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38080MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38080CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
38080CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 38080
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38080
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3808017632nitrate-reduction
3808016301nitrite-reduction

metabolite production

  • @ref: 38080
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
38080oxidase+
38080catalase+1.11.1.6
38080urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38080-+++-++++-++++-+++--

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentisolation date
44729Human blood1962New YorkUSAUSANorth America
38080Human, Child, cerebrospinal fluid1962

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 38080
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Elizabethkingia anophelis NCTC10588GCA_900447425contigncbi1117645
66792Elizabethkingia meningoseptica strain NCTC10588238.88wgspatric238

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.531no
gram-positiveno97.909no
anaerobicno99.758no
aerobicyes90.863no
halophileno95.081no
spore-formingno94.747no
glucose-utilyes87.592no
flagellatedno96.378no
thermophileno99.331yes
glucose-fermentno91.265no

External links

@ref: 38080

culture collection no.: CCUG 4308, CIP 78.8, NCTC 10588

straininfo link

  • @ref: 94413
  • straininfo: 7770

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38080Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2078.8Collection of Institut Pasteur (CIP 78.8)
44729Curators of the CCUGhttps://www.ccug.se/strain?id=4308Culture Collection University of Gothenburg (CCUG) (CCUG 4308)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94413Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7770.1