Strain identifier

BacDive ID: 137583

Type strain: No

Species: Elizabethkingia meningoseptica

Strain Designation: G4071, 13-78

Strain history: CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 13-78 <- R. Minck, Strasbourg Hosp., France: strain B 38593, Flavobacterium meningosepticum

NCBI tax ID(s): 238 (species)

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General

@ref: 38389

BacDive-ID: 137583

DSM-Number: 103689

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic

description: Elizabethkingia meningoseptica G4071 is an obligate aerobe, mesophilic bacterium that was isolated from Tracheal exudate.

NCBI tax id

  • NCBI tax id: 238
  • Matching level: species

strain history

@refhistory
68456<- A. Nicholson, CDC, Atlanta; G4071
38389CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 13-78 <- R. Minck, Strasbourg Hosp., France: strain B 38593, Flavobacterium meningosepticum

doi: 10.13145/bacdive137583.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Elizabethkingia
  • species: Elizabethkingia meningoseptica
  • full scientific name: Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

  • synonyms

    @refsynonym
    20215Flavobacterium meningosepticum
    20215Chryseobacterium meningosepticum

@ref: 38389

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Elizabethkingia

species: Elizabethkingia meningoseptica

full scientific name: Elizabethkingia meningoseptica (King 1959) Kim et al. 2005 emend. Nicholson et al. 2018

strain designation: G4071, 13-78

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.538
6948099.98negative
38389nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38389MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
68456R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
68456NUTRIENT AGAR (DSMZ Medium 1)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
68456OXOID NUTRIENT BROTH (DSMZ Medium 948)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium948.pdf
38389CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
38389CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
38389positivegrowth30mesophilic
68456positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38389
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3838917632nitrate-reduction
3838916301nitrite+reduction

metabolite production

  • @ref: 38389
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
38389oxidase+
38389catalase+1.11.1.6
38389urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38389-+-+-++-+-++---+-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
68456Tracheal exudateStrasbourgFranceFRAEurope48.587.75
38389Human, Tracheal exudate

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
684562Risk group (German classification)
383892Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Elizabethkingia miricola NCTC11305GCA_900447195contigncbi172045
66792Elizabethkingia meningoseptica strain NCTC11305238.86wgspatric238
66792Elizabethkingia meningoseptica NCTC 113052823255045draftimg238

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.187no
gram-positiveno97.86no
anaerobicno99.701no
aerobicyes90.554no
halophileno95.569no
spore-formingno94.746no
glucose-utilyes86.884no
flagellatedno95.441no
thermophileno99.486no
glucose-fermentno91.682no

External links

@ref: 38389

culture collection no.: CIP 78.30, NCTC 11305, DSM 103689

straininfo link

  • @ref: 94442
  • straininfo: 54003

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38389Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2078.30Collection of Institut Pasteur (CIP 78.30)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
68456Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103689Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103689)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94442Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID54003.1