Histophilus somni (CIP 58.63, 872)

Name: Histophilus somni (CIP 58.63, 872)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137582

Type strain

Strain Designation 872

Culture col. no. CIP 58.63 872

NCBI tax ID(s) 731

Special Collections CIP

History 1958, E.L. Biberstein, School Vet. Med., Davis, California, USA, "Haemophilus agni": strain 872 CIP <- 1958, E.L. Biberstein, School Vet. Med., Davis, California, USA, "Haemophilus agni": strain 872

Links

Histophilus somni 872 is a facultative anaerobe, mesophilic, Gram-negative prokaryote of the family Pasteurellaceae.

Gram-negative oval-shaped facultative anaerobe mesophilic

Name and taxonomic classification

SI-ID 68682

CIP 58.63

@ref 20215

Last LPSN update 2026-02-09 11:32:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Histophilus

Species Histophilus somni

Full scientific name Histophilus somni Angen et al. 2003

BacDive ID	Other strains from **Histophilus somni** (20)	Type strain
11751	H. somni 8025, DSM 23850, ATCC 43625, CCUG 36157, ... (type strain)
134745	H. somni 902, CIP 58.64
134746	H. somni 905, CIP 58.65
135735	H. somni CIP 107671
138525	H. somni 8917974, CIP 107676, ATCC 700025
147122	H. somni CCUG 32899
147905	H. somni CCUG 34464
152429	H. somni CCUG 46769
152430	H. somni CCUG 46770, MCCM 03030
152431	H. somni CCUG 46771, MCCM 00338
152432	H. somni CCUG 46772, MCCM 00330
152433	H. somni CCUG 46773, MCCM 02133
152434	H. somni CCUG 46774, MCCM 03029
152435	H. somni CCUG 46775, MCCM 03031
152553	H. somni CCUG 47046
152554	H. somni CCUG 47047
152555	H. somni CCUG 47048
152556	H. somni CCUG 47049
152557	H. somni CCUG 47050
156451	H. somni CCUG 61857

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
38387	negative	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38387	MEDIUM 5 - Columbia agar with 5 % globular extract		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g)
38387	CIP Medium 5			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
38387	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

38387

Oxygen tolerancefacultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
38387	17632 ChEBI	nitrate	+	reduction
38387	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
38387	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
38387	alcohol dehydrogenase	-	1.1.1.1
38387	beta-galactosidase	-	3.2.1.23
38387	catalase	-	1.11.1.6
38387	lysine decarboxylase	-	4.1.1.18
38387	ornithine decarboxylase	+	4.1.1.17
38387	oxidase	-
38387	urease	-	3.5.1.5

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
38387	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
38387		California	USA	USA	North America
38387	Animal, Sheep	California	United States of America	USA	North America	1958

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
38387	2	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38387	Collection of Institut Pasteur ; Curators of the CIP; CIP 58.63
#68371	Automatically annotated from API 50CH acid .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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