Name: Phaeobacter inhibens DSM 17395
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13730

Type strain:

Species: Phaeobacter inhibens

Culture col. no.: DSM 17395

Strain history: <- M. Garnier, Plouzane <- C. Ruiz-Ponte

NCBI tax ID(s): 391619 (strain), 221822 (species)

Other strains from Phaeobacter inhibens

P. inhibens T5, DSM 16374, CIP 109289, LMG ... (type strain)
P. inhibens 2.10, DSM 24588
P. inhibens CIP 109852
P. inhibens P10, 01/009, DSM 29965

Section

Phaeobacter inhibens DSM 17395 is a mesophilic, Gram-negative bacterium that was isolated from seawater from larval cultures of scallop, Pecten maximus.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Phaeobacter*
	Species	**Phaeobacter inhibens**
	Full Scientific Name (LPSN)	Phaeobacter inhibens Martens et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #6947]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6947]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6947]

Culture medium growth

[Ref.: #6947]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6947]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6947]			growth	28 °C

[Ref.: #6947]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #6947]	catalase	+	1.11.1.6
[Ref.: #6947]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6947]	23783	-	-	-	-	-	-	-	+	+	+/-	+	+	+	+	+/-	-	+/-	+	+	+/-	not determinedn.d.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
[Ref.: #66794]	vitamin B12 metabolism	91.18	31 of 34
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	myo-inositol biosynthesis	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	pyrimidine metabolism	88.89	40 of 45
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	purine metabolism	85.11	80 of 94
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	sulfate reduction	76.92	10 of 13
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	carnitine metabolism	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	phenol degradation	75	15 of 20
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	oxidative phosphorylation	69.23	63 of 91
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	4-hydroxymandelate degradation	66.67	6 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	degradation of sugar acids	40	10 of 25
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6947]	Sample type/isolated from	seawater from larval cultures of scallop, Pecten maximus
[Ref.: #6947]	Geographic location (country and/or sea, region)	Galicia
[Ref.: #6947]	Country	Spain
[Ref.: #6947]	Country ISO 3 Code	ESP
[Ref.: #6947]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC176241 (>99% sequence identity) for Phaeobacter from Microbeatlas

Aquatic Samples	6774
Soil Samples	318
Animal Samples	295
Plant Samples	82
Total Samples	7469

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6947]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6947]	Phaeobacter inhibens strain DSM 17395 16S ribosomal RNA gene, partial sequence	KC176241	1380	ENA	221822 tax ID
[Ref.: #20218]	Phaeobacter gallaeciensis strain NBRC16654 16S ribosomal RNA gene, partial sequence	DQ915619	1307	ENA	60890 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phaeobacter inhibens DSM 17395	GCA_000154765	complete	GenBank	391619 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens DSM 17395	391619.36	plasmid	PATRIC	391619 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens DSM 17395	391619.35	plasmid	PATRIC	391619 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens DSM 17395	391619.37	plasmid	PATRIC	391619 tax ID	*
[Ref.: #66792]	Phaeobacter gallaeciensis DSM 17395	2510065029	complete	JGI IMG/M	391619 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phaeobacter inhibens DSM 17395 DSM 17395 NCBI: GCA_000154765.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phaeobacter inhibens DSM 17395 DSM 17395 NCBI: GCA_000154765.2
[Ref.: #69480]	motile	yes	77.81	no
[Ref.: #69480]	flagellated	no	62.405	no
[Ref.: #69480]	gram-positive	no	98.683	no
[Ref.: #69480]	anaerobic	no	98.692	no
[Ref.: #69480]	aerobic	yes	92.967	no
[Ref.: #69480]	halophile	yes	70.664	no
[Ref.: #69480]	spore-forming	no	94.468	no
[Ref.: #69480]	thermophile	no	96.757	no
[Ref.: #69480]	glucose-util	yes	84.213	no
[Ref.: #69480]	glucose-ferment	no	91.086	yes

Availability in culture collections External links

[Ref.: #6947]

Culture collection no.

DSM 17395

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Global Response of Phaeobacter inhibens DSM 17395 to Deletion of Its 262-kb Chromid Encoding Antibiotic Synthesis.	Wunsch D, Strijkstra A, Wohlbrand L, Freese HM, Scheve S, Hinrichs C, Trautwein K, Maczka M, Petersen J, Schulz S, Overmann J, Rabus R	Microb Physiol	10.1159/000508591	2020	*
Metabolism	Amino Acid and Sugar Catabolism in the Marine Bacterium Phaeobacter inhibens DSM 17395 from an Energetic Viewpoint.	Wunsch D, Trautwein K, Scheve S, Hinrichs C, Feenders C, Blasius B, Schomburg D, Rabus R	Appl Environ Microbiol	10.1128/AEM.02095-19	2019	*
Metabolism	The marine bacterium Phaeobacter inhibens secures external ammonium by rapid buildup of intracellular nitrogen stocks.	Trautwein K, Hensler M, Wiegmann K, Skorubskaya E, Wohlbrand L, Wunsch D, Hinrichs C, Feenders C, Muller C, Schell K, Ruppersberg H, Vagts J, Kossmehl S, Steinbuchel A, Schmidt-Kopplin P, Wilkes H, Hillebrand H, Blasius B, Schomburg D, Rabus R	FEMS Microbiol Ecol	10.1093/femsec/fiy154	2018	*
Cultivation	A Novel Microbial Culture Chamber Co-cultivation System to Study Algal-Bacteria Interactions Using Emiliania huxleyi and Phaeobacter inhibens as Model Organisms.	Thogersen MS, Melchiorsen J, Ingham C, Gram L	Front Microbiol	10.3389/fmicb.2018.01705	2018	*
Phylogeny	Phylogenetic distribution of roseobacticides in the Roseobacter group and their effect on microalgae.	Sonnenschein EC, Phippen CBW, Bentzon-Tilia M, Rasmussen SA, Nielsen KF, Gram L	Environ Microbiol Rep	10.1111/1758-2229.12649	2018	*
Metabolism	The fate of lysine: Non-targeted stable isotope analysis reveals parallel ways for lysine catabolization in Phaeobacter inhibens.	Reimer LC, Will SE, Schomburg D	PLoS One	10.1371/journal.pone.0186395	2017	*
Metabolism	Non-Redfield, nutrient synergy and flexible internal elemental stoichiometry in a marine bacterium.	Trautwein K, Feenders C, Hulsch R, Ruppersberg HS, Strijkstra A, Kant M, Vagts J, Wunsch D, Michalke B, Maczka M, Schulz S, Hillebrand H, Blasius B, Rabus R	FEMS Microbiol Ecol	10.1093/femsec/fix059	2017	*
Metabolism	Chemical differentiation of three DMSP lyases from the marine Roseobacter group.	Burkhardt I, Lauterbach L, Brock NL, Dickschat JS	Org Biomol Chem	10.1039/c7ob00913e	2017	*
Metabolism	The limits to growth - energetic burden of the endogenous antibiotic tropodithietic acid in Phaeobacter inhibens DSM 17395.	Will SE, Neumann-Schaal M, Heydorn RL, Bartling P, Petersen J, Schomburg D	PLoS One	10.1371/journal.pone.0177295	2017	*
Cultivation	Photometric Determination of Ammonium and Phosphate in Seawater Medium Using a Microplate Reader.	Ruppersberg HS, Goebel MR, Kleinert SI, Wunsch D, Trautwein K, Rabus R	J Mol Microbiol Biotechnol	10.1159/000454814	2017	*
Genetics	Draft genome sequence of the marine Rhodobacteraceae strain O3.65, cultivated from oil-polluted seawater of the Deepwater Horizon oil spill.	Giebel HA, Klotz F, Voget S, Poehlein A, Grosser K, Teske A, Brinkhoff T	Stand Genomic Sci	10.1186/s40793-016-0201-7	2016	*
Metabolism	Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analyses.	Trautwein K, Will SE, Hulsch R, Maschmann U, Wiegmann K, Hensler M, Michael V, Ruppersberg H, Wunsch D, Feenders C, Neumann-Schaal M, Kaltenhauser S, Ulbrich M, Schmidt-Hohagen K, Blasius B, Petersen J, Schomburg D, Rabus R	Environ Microbiol	10.1111/1462-2920.13381	2016	*
Phylogeny	Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters.	Michael V, Frank O, Bartling P, Scheuner C, Goker M, Brinkmann H, Petersen J	ISME J	10.1038/ismej.2016.30	2016	*
Metabolism	Biofilm formation is not a prerequisite for production of the antibacterial compound tropodithietic acid in Phaeobacter inhibens DSM17395.	Prol Garcia MJ, D'Alvise PW, Rygaard AM, Gram L	J Appl Microbiol	10.1111/jam.12659	2014	*
Metabolism	Fifteen years of physiological proteo(geno)mics with (marine) environmental bacteria.	Rabus R	Arch Physiol Biochem	10.3109/13813455.2014.951658	2014	*
Genetics	Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)).	Frank O, Pradella S, Rohde M, Scheuner C, Klenk HP, Goker M, Petersen J	Stand Genomic Sci	10.4056/sigs.5179110	2014	*
Genetics	Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.	Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Klenk HP, Goker M, Brinkhoff T	Stand Genomic Sci	10.4056/sigs.4448212	2013	*
Metabolism	Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade.	Wiegmann K, Hensler M, Wohlbrand L, Ulbrich M, Schomburg D, Rabus R	Appl Environ Microbiol	10.1128/AEM.00719-14	2014	*
Metabolism	Acyl-homoserine lactone quorum sensing in the Roseobacter clade.	Zan J, Liu Y, Fuqua C, Hill RT	Int J Mol Sci	10.3390/ijms15010654	2014	*
Phylogeny	Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.	Buddruhs N, Pradella S, Goker M, Pauker O, Pukall R, Sproer C, Schumann P, Petersen J, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijs.0.053900-0	2013	*
Metabolism	Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade).	Druppel K, Hensler M, Trautwein K, Kossmehl S, Wohlbrand L, Schmidt-Hohagen K, Ulbrich M, Bergen N, Meier-Kolthoff JP, Goker M, Klenk HP, Schomburg D, Rabus R	Environ Microbiol	10.1111/1462-2920.12276	2013	*
Metabolism	Toxicity of bioactive and probiotic marine bacteria and their secondary metabolites in Artemia sp. and Caenorhabditis elegans as eukaryotic model organisms.	Neu AK, Mansson M, Gram L, Prol-Garcia MJ	Appl Environ Microbiol	10.1128/AEM.02717-13	2013	*
Metabolism	Subcellular protein localization (cell envelope) in Phaeobacter inhibens DSM 17395.	Kossmehl S, Wohlbrand L, Druppel K, Feenders C, Blasius B, Rabus R	Proteomics	10.1002/pmic.201300112	2013	*
Metabolism	Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395.	Zech H, Hensler M, Kossmehl S, Druppel K, Wohlbrand L, Trautwein K, Colby T, Schmidt J, Reinhardt R, Schmidt-Hohagen K, Schomburg D, Rabus R	Proteomics	10.1002/pmic.201200560	2013	*
Metabolism	Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients.	Zech H, Hensler M, Kossmehl S, Druppel K, Wohlbrand L, Trautwein K, Hulsch R, Maschmann U, Colby T, Schmidt J, Reinhardt R, Schmidt-Hohagen K, Schomburg D, Rabus R	Proteomics	10.1002/pmic.201200513	2013	*
Phylogeny	Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera.	Martens T, Heidorn T, Pukall R, Simon M, Tindall BJ, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijs.0.63724-0	2006	*
Biotechnology	Impact of Quorum Sensing and Tropodithietic Acid Production on the Exometabolome of Phaeobacter inhibens.	Srinivas S, Berger M, Brinkhoff T, Niggemann J	Front Microbiol	10.3389/fmicb.2022.917969	2022	*
	Nanomolar responsiveness of marine Phaeobacter inhibens DSM 17395 toward carbohydrates and amino acids.	Weiten A, Kalvelage K, Neumann-Schaal M, Buschen R, Scheve S, Winklhofer M, Rabus R	Microb Physiol	10.1159/000524702	2022	*
	Luciferase-Based Determination of ATP/NAD(H) Pools in a Marine (Environmental) Bacterium.	Wunsch D, Scheve S, Weiten A, Kalvelage K, Rabus R	Microb Physiol	10.1159/000522414	2022	*
	A novel class of sulfur-containing aminolipids widespread in marine roseobacters.	Smith AF, Silvano E, Pauker O, Guillonneau R, Quareshy M, Murphy A, Mausz MA, Stirrup R, Rihtman B, Aguilo-Ferretjans M, Brandsma J, Petersen J, Scanlan DJ, Chen Y	ISME J	10.1038/s41396-021-00933-x	2021	*
	Acyl-group specificity of AHL synthases involved in quorum-sensing in Roseobacter group bacteria.	Ziesche L, Rinkel J, Dickschat JS, Schulz S	Beilstein J Org Chem	10.3762/bjoc.14.112	2018	*
	The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316(T)-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae.	Bartling P, Brinkmann H, Bunk B, Overmann J, Goker M, Petersen J	Front Microbiol	10.3389/fmicb.2017.01787	2017	*
	Phaeobacter inhibens as biocontrol agent against Vibrio vulnificus in oyster models.	Porsby CH, Gram L	Food Microbiol	10.1016/j.fm.2016.01.005	2016	*
	Plasmid curing and the loss of grip--the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae.	Frank O, Michael V, Pauker O, Boedeker C, Jogler C, Rohde M, Petersen J	Syst Appl Microbiol	10.1016/j.syapm.2014.12.001	2014	*
	Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid.	Rabe P, Klapschinski TA, Brock NL, Citron CA, D'Alvise P, Gram L, Dickschat JS	Beilstein J Org Chem	10.3762/bjoc.10.188	2014	*

References

#6947

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17395

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Phaeobacter inhibens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Phaeobacter inhibens DSM 17395 DSM 17395

Phaeobacter inhibens DSM 17395 DSM 17395

Change proposal

Change proposal