Phaeobacter inhibens (DSM 24588, 2.10)

Name: Phaeobacter inhibens (DSM 24588, 2.10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23227

Type strain

Strain Designation 2.10

Culture col. no. DSM 24588 2.10

NCBI tax ID(s) 221822

Special Collections DSMZ

History <- T. Thomas, University of New South Wales; strain 2.10

Links

Phaeobacter inhibens 2.10 is a bacterium that was isolated from surface of green macroalga Ulva australis. Deposited as Phaeobacter gallaeciensis.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 407980

DSM 24588

@ref 20215

Last LPSN update 2026-02-09 11:23:42

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Phaeobacter

Species Phaeobacter inhibens

Full scientific name Phaeobacter inhibens Martens et al. 2006

BacDive ID	Other strains from **Phaeobacter inhibens** (4)	Type strain
13731	P. inhibens T5, DSM 16374, CIP 109289, LMG 22475 (type strain)
13730	P. inhibens DSM 17395
137017	P. inhibens CIP 109852
158073	P. inhibens P10, 01/009, DSM 29965

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.5
125439	negative	98.5

Colony morphology

18886

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18886	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18886	positive	growth	20

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	95.3

Spore formation

@ref	Spore formation	Confidence
125438		90.382
125439		97.8

Enzymes

@ref	Value	Activity	Ec
18886	catalase	+	1.11.1.6
18886	cytochrome-c oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Green algae
#Host	#Microbial	#Bacteria

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
18886	surface of green macroalga Ulva australis. Deposited as Phaeobacter gallaeciensis	Ulva australis	Australia	AUS	Australia and Oceania

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18886	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM344355v1 assembly for Phaeobacter inhibens 2.10	complete	GCA_003443555	221822.28	2841412109	221822	98.72
66792	ASM15474v2 assembly for Phaeobacter inhibens 2.10	complete	GCA_000154745	383629.4	2510065028	383629	97.28

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Phaeobacter inhibens 2.10
IMG: 2841412109

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	81.90	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Phaeobacter inhibens 2.10
NCBI: GCA_003443555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	94.86	no
125438	aerobic	aerobicⓘ	yes	82.54	no
125438	spore-forming	spore-formingⓘ	no	90.38	no
125438	thermophilic	thermophileⓘ	no	98.45	yes
125438	flagellated	motile2+ⓘ	yes	73.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Roseobacter-Group Bacterium Phaeobacter as a Safe Probiotic Solution for Aquaculture.	Sonnenschein EC, Jimenez G, Castex M, Gram L.	Appl Environ Microbiol	10.1128/aem.02581-20	2021
	Algal p-coumaric acid induces oxidative stress and siderophore biosynthesis in the bacterial symbiont Phaeobacter inhibens.	Wang R, Gallant E, Wilson MZ, Wu Y, Li A, Gitai Z, Seyedsayamdost MR.	Cell Chem Biol	10.1016/j.chembiol.2021.08.002	2022
Metabolism	Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters.	Michael V, Frank O, Bartling P, Scheuner C, Goker M, Brinkmann H, Petersen J.	ISME J	10.1038/ismej.2016.30	2016
	Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)).	Frank O, Pradella S, Rohde M, Scheuner C, Klenk HP, Goker M, Petersen J.	Stand Genomic Sci	10.4056/sigs.5179110	2014
Phenotype	Genomic Evolution of the Marine Bacterium Phaeobacter inhibens during Biofilm Growth.	Majzoub ME, McElroy K, Maczka M, Schulz S, Thomas T, Egan S	Appl Environ Microbiol	10.1128/AEM.00769-21	2021
	Phaeobacter inhibens controls bacterial community assembly on a marine diatom.	Majzoub ME, Beyersmann PG, Simon M, Thomas T, Brinkhoff T, Egan S	FEMS Microbiol Ecol	10.1093/femsec/fiz060	2019
	Causes and Consequences of a Variant Strain of Phaeobacter inhibens With Reduced Competition.	Majzoub ME, McElroy K, Maczka M, Thomas T, Egan S	Front Microbiol	10.3389/fmicb.2018.02601	2018
Genetics	Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.	Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Klenk HP, Goker M, Brinkhoff T	Stand Genomic Sci	10.4056/sigs.4448212	2013

References

#18886	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24588
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phaeobacter inhibens (DSM 24588, 2.10)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003443555

Genome-based predictions

Predictions

Literature

Literature

References

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