Name: Phaeobacter inhibens 2.10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23227

Type strain:

Species: Phaeobacter inhibens

Strain Designation: 2.10

Culture col. no.: DSM 24588

Strain history: <- T. Thomas, University of New South Wales; strain 2.10

NCBI tax ID(s): 221822 (species)

SI-ID 407980

DSM 24588

Other strains from Phaeobacter inhibens

P. inhibens T5, DSM 16374, CIP 109289, LMG ... (type strain)
P. inhibens DSM 17395
P. inhibens CIP 109852
P. inhibens P10, 01/009, DSM 29965

Section

Phaeobacter inhibens 2.10 is a psychrophilic bacterium that was isolated from surface of green macroalga Ulva australis. Deposited as Phaeobacter gallaeciensis.

psychrophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Phaeobacter*
	Species	**Phaeobacter inhibens**
	Full Scientific Name (LPSN)	Phaeobacter inhibens Martens et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #18886]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18886]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #18886]

Culture medium growth

[Ref.: #18886]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18886]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18886]			growth	20 °C

[Ref.: #18886]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #18886]		catalase	+	1.11.1.6
[Ref.: #18886]		cytochrome-c oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18886]	Sample type/isolated from	surface of green macroalga Ulva australis. Deposited as Phaeobacter gallaeciensis
[Ref.: #18886]	Host species	Ulva australis
[Ref.: #18886]	Country	Australia
[Ref.: #18886]	Country ISO 3 Code	AUS
[Ref.: #18886]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host	#Algae	#Green algae
#Host	#Microbial	#Bacteria

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18886]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phaeobacter inhibens 2.10	383629.18	plasmid	PATRIC	383629 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens 2.10	383629.17	plasmid	PATRIC	383629 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens 2.10	383629.16	plasmid	PATRIC	383629 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens 2.10	2841412109	complete	JGI IMG/M	383629 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens 2.10	2510065028	complete	JGI IMG/M	383629 tax ID	*
[Ref.: #66792]	Phaeobacter inhibens 2.10	GCA_003443555	complete	GenBank	221822 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phaeobacter inhibens 2.10 NCBI: GCA_003443555.1
[Ref.: #69480]	motile	yes	72.834	no
[Ref.: #69480]	flagellated	no	61.258	no
[Ref.: #69480]	gram-positive	no	98.776	no
[Ref.: #69480]	anaerobic	no	99.054	no
[Ref.: #69480]	aerobic	yes	94.083	no
[Ref.: #69480]	halophile	yes	77.856	no
[Ref.: #69480]	spore-forming	no	94.612	no
[Ref.: #69480]	glucose-util	yes	83.176	no
[Ref.: #69480]	thermophile	no	97.016	yes
[Ref.: #69480]	glucose-ferment	no	90.497	no

Availability in culture collections External links

[Ref.: #18886]

Culture collection no.

DSM 24588

[Ref.: #87453]

SI-ID 407980

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phenotype	Genomic Evolution of the Marine Bacterium Phaeobacter inhibens during Biofilm Growth.	Majzoub ME, McElroy K, Maczka M, Schulz S, Thomas T, Egan S	Appl Environ Microbiol	10.1128/AEM.00769-21	2021	*
Genetics	Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.	Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Klenk HP, Goker M, Brinkhoff T	Stand Genomic Sci	10.4056/sigs.4448212	2013	*
	Phaeobacter inhibens controls bacterial community assembly on a marine diatom.	Majzoub ME, Beyersmann PG, Simon M, Thomas T, Brinkhoff T, Egan S	FEMS Microbiol Ecol	10.1093/femsec/fiz060	2019	*
	Causes and Consequences of a Variant Strain of Phaeobacter inhibens With Reduced Competition.	Majzoub ME, McElroy K, Maczka M, Thomas T, Egan S	Front Microbiol	10.3389/fmicb.2018.02601	2018	*

References

#18886

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24588

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87453

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407980.1 )

* These data were automatically processed and therefore are not curated

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