Strain identifier
BacDive ID: 13730
Type strain: 
Species: Phaeobacter inhibens
Strain history: <- M. Garnier, Plouzane <- C. Ruiz-Ponte
NCBI tax ID(s): 391619 (strain), 221822 (species)
version 8.1 (current version)
General
@ref: 6947
BacDive-ID: 13730
DSM-Number: 17395
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Phaeobacter inhibens DSM 17395 is a mesophilic, Gram-negative bacterium that was isolated from seawater from larval cultures of scallop, Pecten maximus.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 391619 | strain |
| 221822 | species |
strain history
- @ref: 6947
- history: <- M. Garnier, Plouzane <- C. Ruiz-Ponte
doi: 10.13145/bacdive13730.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Phaeobacter
- species: Phaeobacter inhibens
- full scientific name: Phaeobacter inhibens Martens et al. 2006
@ref: 6947
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Phaeobacter
species: Phaeobacter inhibens
full scientific name: Phaeobacter inhibens Martens et al. 2006 emend. Vandecandelaere et al. 2008 emend. Dogs et al. 2013
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.998
colony morphology
- @ref: 6947
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 6947
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 6947
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.991 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 6947 | catalase | + | 1.11.1.6 |
| 6947 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6947 | - | - | - | - | - | - | - | + | + | +/- | + | + | + | + | +/- | - | +/- | + | + | +/- |
Isolation, sampling and environmental information
isolation
- @ref: 6947
- sample type: seawater from larval cultures of scallop, Pecten maximus
- geographic location: Galicia
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Invertebrates (Other) | #Mollusca |
taxonmaps
- @ref: 69479
- File name: preview.99_1899.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_355;97_566;98_1495;99_1899&stattab=map
- Last taxonomy: Phaeobacter
- 16S sequence: KC176241
- Sequence Identity:
- Total samples: 7469
- soil counts: 318
- aquatic counts: 6774
- animal counts: 295
- plant counts: 82
Safety information
risk assessment
- @ref: 6947
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Phaeobacter gallaeciensis strain NBRC16654 16S ribosomal RNA gene, partial sequence | DQ915619 | 1307 | ena | 60890 |
| 6947 | Phaeobacter inhibens strain DSM 17395 16S ribosomal RNA gene, partial sequence | KC176241 | 1380 | ena | 221822 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Phaeobacter inhibens DSM 17395 | GCA_000154765 | complete | ncbi | 391619 |
| 66792 | Phaeobacter inhibens DSM 17395 | 391619.36 | plasmid | patric | 391619 |
| 66792 | Phaeobacter inhibens DSM 17395 | 391619.35 | plasmid | patric | 391619 |
| 66792 | Phaeobacter inhibens DSM 17395 | 391619.37 | plasmid | patric | 391619 |
| 66792 | Phaeobacter gallaeciensis DSM 17395 | 2510065029 | complete | img | 391619 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 77.81 | no |
| flagellated | no | 62.405 | no |
| gram-positive | no | 98.683 | no |
| anaerobic | no | 98.692 | no |
| aerobic | yes | 92.967 | no |
| halophile | yes | 70.664 | no |
| spore-forming | no | 94.468 | no |
| thermophile | no | 96.757 | no |
| glucose-util | yes | 84.213 | no |
| glucose-ferment | no | 91.086 | yes |
External links
@ref: 6947
culture collection no.: DSM 17395
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16738106 | Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. | Martens T, Heidorn T, Pukall R, Simon M, Tindall BJ, Brinkhoff T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63724-0 | 2006 | Chromosomes, Bacterial, DNA, Bacterial/genetics, Fatty Acids/analysis, Microbial Sensitivity Tests, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Roseobacter/*classification/drug effects/growth & development/isolation & purification/ultrastructure | Genetics |
| Metabolism | 23613352 | Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients. | Zech H, Hensler M, Kossmehl S, Druppel K, Wohlbrand L, Trautwein K, Hulsch R, Maschmann U, Colby T, Schmidt J, Reinhardt R, Schmidt-Hohagen K, Schomburg D, Rabus R | Proteomics | 10.1002/pmic.201200513 | 2013 | *Adaptation, Physiological, Amino Acids/metabolism, Ammonium Compounds/metabolism, Bacterial Proteins/metabolism, Biological Transport, Bioreactors/microbiology, Databases, Protein, Extracellular Space/metabolism, Metabolomics, Phospholipids/metabolism, Proteomics, Roseobacter/*growth & development/metabolism/*physiology | |
| Metabolism | 23625753 | Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395. | Zech H, Hensler M, Kossmehl S, Druppel K, Wohlbrand L, Trautwein K, Colby T, Schmidt J, Reinhardt R, Schmidt-Hohagen K, Schomburg D, Rabus R | Proteomics | 10.1002/pmic.201200560 | 2013 | Amino Acids/biosynthesis/*metabolism, Bacterial Proteins/metabolism, Culture Media/pharmacology, Databases, Protein, Intracellular Space/drug effects/metabolism, Metabolomics, Proteome/metabolism, Proteomics, Roseobacter/drug effects/growth & development/*metabolism | Pathogenicity |
| Metabolism | 23907795 | Subcellular protein localization (cell envelope) in Phaeobacter inhibens DSM 17395. | Kossmehl S, Wohlbrand L, Druppel K, Feenders C, Blasius B, Rabus R | Proteomics | 10.1002/pmic.201300112 | 2013 | Bacterial Proteins/*metabolism, Cell Wall/*metabolism, Databases, Protein, Electrophoresis, Polyacrylamide Gel, Protein Transport, Proteome/metabolism, Proteomics, Roseobacter/*metabolism, Subcellular Fractions/metabolism | Enzymology |
| Metabolism | 24141121 | Toxicity of bioactive and probiotic marine bacteria and their secondary metabolites in Artemia sp. and Caenorhabditis elegans as eukaryotic model organisms. | Neu AK, Mansson M, Gram L, Prol-Garcia MJ | Appl Environ Microbiol | 10.1128/AEM.02717-13 | 2013 | Actinobacteria/*metabolism/pathogenicity, Alphaproteobacteria/*metabolism/pathogenicity, Animals, Artemia/*microbiology/physiology, Bacterial Toxins/*toxicity, Caenorhabditis elegans/*microbiology/physiology, Gammaproteobacteria/*metabolism/pathogenicity, Probiotics/*toxicity, Survival Analysis | Pathogenicity |
| Metabolism | 24165547 | Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade). | Druppel K, Hensler M, Trautwein K, Kossmehl S, Wohlbrand L, Schmidt-Hohagen K, Ulbrich M, Bergen N, Meier-Kolthoff JP, Goker M, Klenk HP, Schomburg D, Rabus R | Environ Microbiol | 10.1111/1462-2920.12276 | 2013 | Amino Acids/*metabolism, Bacterial Proteins/genetics/metabolism, *Metabolic Networks and Pathways, Roseobacter/genetics/*metabolism, Species Specificity | Phylogeny |
| Phylogeny | 24187021 | Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395. | Buddruhs N, Pradella S, Goker M, Pauker O, Pukall R, Sproer C, Schumann P, Petersen J, Brinkhoff T | Int J Syst Evol Microbiol | 10.1099/ijs.0.053900-0 | 2013 | Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Electrophoresis, Gel, Pulsed-Field, Molecular Sequence Data, Nucleic Acid Conformation, Nucleic Acid Hybridization, *Phylogeny, Plasmids/genetics, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/growth & development, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Enzymology |
| Metabolism | 24402124 | Acyl-homoserine lactone quorum sensing in the Roseobacter clade. | Zan J, Liu Y, Fuqua C, Hill RT | Int J Mol Sci | 10.3390/ijms15010654 | 2014 | Acyl-Butyrolactones/chemistry/*metabolism, Animals, Bacterial Proteins/metabolism, Computational Biology, Dinoflagellida/physiology, Porifera/physiology, *Quorum Sensing, Repressor Proteins/metabolism, Roseobacter/*physiology, Trans-Activators/metabolism, Transcription Factors/metabolism, Virulence Factors/metabolism | |
| Metabolism | 24858085 | Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade. | Wiegmann K, Hensler M, Wohlbrand L, Ulbrich M, Schomburg D, Rabus R | Appl Environ Microbiol | 10.1128/AEM.00719-14 | 2014 | Bacterial Proteins/genetics/metabolism, *Carbohydrate Metabolism, Citric Acid Cycle, Glycolysis, Proteomics, Roseobacter/genetics/isolation & purification/*metabolism | Enzymology |
| Genetics | 24976890 | Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens. | Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Klenk HP, Goker M, Brinkhoff T | Stand Genomic Sci | 10.4056/sigs.4448212 | 2013 | ||
| 25161739 | Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid. | Rabe P, Klapschinski TA, Brock NL, Citron CA, D'Alvise P, Gram L, Dickschat JS | Beilstein J Org Chem | 10.3762/bjoc.10.188 | 2014 | |||
| Genetics | 25197473 | Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)). | Frank O, Pradella S, Rohde M, Scheuner C, Klenk HP, Goker M, Petersen J | Stand Genomic Sci | 10.4056/sigs.5179110 | 2014 | ||
| Metabolism | 25233489 | Fifteen years of physiological proteo(geno)mics with (marine) environmental bacteria. | Rabus R | Arch Physiol Biochem | 10.3109/13813455.2014.951658 | 2014 | Aerobiosis, Aquatic Organisms/*metabolism, Bacteria/*metabolism, *Environment, Hydrocarbons/metabolism, Proteomics/*methods | |
| Metabolism | 25284322 | Biofilm formation is not a prerequisite for production of the antibacterial compound tropodithietic acid in Phaeobacter inhibens DSM17395. | Prol Garcia MJ, D'Alvise PW, Rygaard AM, Gram L | J Appl Microbiol | 10.1111/jam.12659 | 2014 | Anti-Bacterial Agents/*biosynthesis, Bacterial Adhesion/genetics, Biofilms/*growth & development, Genes, Bacterial, Mutagenesis, Rhodobacteraceae/genetics/metabolism/*physiology, Tropolone/*analogs & derivatives/metabolism | Biotechnology |
| 25595869 | Plasmid curing and the loss of grip--the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae. | Frank O, Michael V, Pauker O, Boedeker C, Jogler C, Rohde M, Petersen J | Syst Appl Microbiol | 10.1016/j.syapm.2014.12.001 | 2014 | *Bacterial Adhesion, Biofilms/*growth & development, Genes, Bacterial, *Locomotion, *Plasmids, Replicon, Rhodobacteraceae/genetics/*physiology, Sequence Deletion | ||
| Phylogeny | 26953602 | Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters. | Michael V, Frank O, Bartling P, Scheuner C, Goker M, Brinkmann H, Petersen J | ISME J | 10.1038/ismej.2016.30 | 2016 | Bacterial Proteins/genetics/metabolism, *Biofilms, Molecular Sequence Data, *Operon, Phylogeny, Plasmids/*genetics/metabolism, Replicon, Rhamnose/*metabolism, Roseobacter/classification/genetics/isolation & purification/*physiology | Metabolism |
| 27052703 | Phaeobacter inhibens as biocontrol agent against Vibrio vulnificus in oyster models. | Porsby CH, Gram L | Food Microbiol | 10.1016/j.fm.2016.01.005 | 2016 | Animals, *Antibiosis, Coculture Techniques, Food Contamination/*prevention & control, Ostreidae/*microbiology, Rhodobacteraceae/growth & development/*physiology, Shellfish/*microbiology, Vibrio vulnificus/*growth & development | ||
| Metabolism | 27233797 | Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analyses. | Trautwein K, Will SE, Hulsch R, Maschmann U, Wiegmann K, Hensler M, Michael V, Ruppersberg H, Wunsch D, Feenders C, Neumann-Schaal M, Kaltenhauser S, Ulbrich M, Schmidt-Hohagen K, Blasius B, Petersen J, Schomburg D, Rabus R | Environ Microbiol | 10.1111/1462-2920.13381 | 2016 | Amino Acids/metabolism, Energy Metabolism, *Plasmids, Replicon, Rhodobacteraceae/*genetics/growth & development, Roseobacter/genetics | |
| Genetics | 27777651 | Draft genome sequence of the marine Rhodobacteraceae strain O3.65, cultivated from oil-polluted seawater of the Deepwater Horizon oil spill. | Giebel HA, Klotz F, Voget S, Poehlein A, Grosser K, Teske A, Brinkhoff T | Stand Genomic Sci | 10.1186/s40793-016-0201-7 | 2016 | ||
| Cultivation | 28171869 | Photometric Determination of Ammonium and Phosphate in Seawater Medium Using a Microplate Reader. | Ruppersberg HS, Goebel MR, Kleinert SI, Wunsch D, Trautwein K, Rabus R | J Mol Microbiol Biotechnol | 10.1159/000454814 | 2017 | Ammonium Compounds/*analysis/chemistry, Ascorbic Acid/chemistry, Culture Media/*chemistry, Hypochlorous Acid/chemistry, Molybdenum/chemistry, Phosphates/*analysis/chemistry, Photometry/instrumentation/*methods, Roseobacter/growth & development/metabolism, Salicylates/chemistry, Seawater/*chemistry, Sensitivity and Specificity, Statistics as Topic, Zinc Acetate/chemistry | Metabolism |
| Metabolism | 28481933 | The limits to growth - energetic burden of the endogenous antibiotic tropodithietic acid in Phaeobacter inhibens DSM 17395. | Will SE, Neumann-Schaal M, Heydorn RL, Bartling P, Petersen J, Schomburg D | PLoS One | 10.1371/journal.pone.0177295 | 2017 | Anti-Bacterial Agents/biosynthesis/*pharmacology, Metabolome, Mutation, Oxygen/metabolism, Rhodobacteraceae/drug effects/genetics/*growth & development/metabolism, Tropolone/*analogs & derivatives/pharmacology | Pathogenicity |
| Metabolism | 28485454 | Chemical differentiation of three DMSP lyases from the marine Roseobacter group. | Burkhardt I, Lauterbach L, Brock NL, Dickschat JS | Org Biomol Chem | 10.1039/c7ob00913e | 2017 | Acrylates/chemistry/metabolism, Carbon-Sulfur Lyases/*chemistry/metabolism, Molecular Structure, Roseobacter/*enzymology, Sulfides/chemistry/metabolism, Sulfonium Compounds/chemistry/metabolism | Enzymology |
| Metabolism | 28486660 | Non-Redfield, nutrient synergy and flexible internal elemental stoichiometry in a marine bacterium. | Trautwein K, Feenders C, Hulsch R, Ruppersberg HS, Strijkstra A, Kant M, Vagts J, Wunsch D, Michalke B, Maczka M, Schulz S, Hillebrand H, Blasius B, Rabus R | FEMS Microbiol Ecol | 10.1093/femsec/fix059 | 2017 | Ammonium Compounds/*pharmacology, Biomass, Ecosystem, Heterotrophic Processes, Oceans and Seas, Phosphates/*pharmacology, Roseobacter/*growth & development/metabolism | |
| 28983283 | The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316(T)-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae. | Bartling P, Brinkmann H, Bunk B, Overmann J, Goker M, Petersen J | Front Microbiol | 10.3389/fmicb.2017.01787 | 2017 | |||
| Metabolism | 29059219 | The fate of lysine: Non-targeted stable isotope analysis reveals parallel ways for lysine catabolization in Phaeobacter inhibens. | Reimer LC, Will SE, Schomburg D | PLoS One | 10.1371/journal.pone.0186395 | 2017 | Chromatography, High Pressure Liquid, Citric Acid Cycle, Gas Chromatography-Mass Spectrometry, Isotopes/metabolism, Lysine/*metabolism, Rhodobacteraceae/*metabolism | |
| Phylogeny | 29624899 | Phylogenetic distribution of roseobacticides in the Roseobacter group and their effect on microalgae. | Sonnenschein EC, Phippen CBW, Bentzon-Tilia M, Rasmussen SA, Nielsen KF, Gram L | Environ Microbiol Rep | 10.1111/1758-2229.12649 | 2018 | Biosynthetic Pathways, Microalgae/*growth & development/*microbiology, Phylogeny, Roseobacter/classification/*metabolism, Tropolone/*analogs & derivatives/metabolism | Metabolism |
| 29977398 | Acyl-group specificity of AHL synthases involved in quorum-sensing in Roseobacter group bacteria. | Ziesche L, Rinkel J, Dickschat JS, Schulz S | Beilstein J Org Chem | 10.3762/bjoc.14.112 | 2018 | |||
| Cultivation | 30105010 | A Novel Microbial Culture Chamber Co-cultivation System to Study Algal-Bacteria Interactions Using Emiliania huxleyi and Phaeobacter inhibens as Model Organisms. | Thogersen MS, Melchiorsen J, Ingham C, Gram L | Front Microbiol | 10.3389/fmicb.2018.01705 | 2018 | ||
| Metabolism | 30124819 | The marine bacterium Phaeobacter inhibens secures external ammonium by rapid buildup of intracellular nitrogen stocks. | Trautwein K, Hensler M, Wiegmann K, Skorubskaya E, Wohlbrand L, Wunsch D, Hinrichs C, Feenders C, Muller C, Schell K, Ruppersberg H, Vagts J, Kossmehl S, Steinbuchel A, Schmidt-Kopplin P, Wilkes H, Hillebrand H, Blasius B, Schomburg D, Rabus R | FEMS Microbiol Ecol | 10.1093/femsec/fiy154 | 2018 | Ammonium Compounds/analysis/*metabolism, Anti-Bacterial Agents/metabolism, Bacterial Proteins/metabolism, Biomass, Heterotrophic Processes, Nitrogen/*metabolism, Plankton/chemistry/*metabolism, Roseobacter/chemistry/*metabolism, Seawater/chemistry/*microbiology, Tropolone/analogs & derivatives/metabolism | |
| Metabolism | 31604772 | Amino Acid and Sugar Catabolism in the Marine Bacterium Phaeobacter inhibens DSM 17395 from an Energetic Viewpoint. | Wunsch D, Trautwein K, Scheve S, Hinrichs C, Feenders C, Blasius B, Schomburg D, Rabus R | Appl Environ Microbiol | 10.1128/AEM.02095-19 | 2019 | Adenosine Triphosphate/metabolism, Amino Acids/*metabolism, Biomass, Bioreactors, Carbohydrate Metabolism, Heterotrophic Processes/*physiology, Metabolic Networks and Pathways, Rhodobacteraceae/growth & development/*metabolism, Roseobacter/metabolism, Sugars/*metabolism, Tropolone/analogs & derivatives | |
| Metabolism | 32958725 | Global Response of Phaeobacter inhibens DSM 17395 to Deletion of Its 262-kb Chromid Encoding Antibiotic Synthesis. | Wunsch D, Strijkstra A, Wohlbrand L, Freese HM, Scheve S, Hinrichs C, Trautwein K, Maczka M, Petersen J, Schulz S, Overmann J, Rabus R | Microb Physiol | 10.1159/000508591 | 2020 | Amino Acids, Anti-Bacterial Agents/*biosynthesis, Bacterial Proteins/genetics/metabolism, Biological Transport, Bioreactors, Carbon Dioxide, Chromosomes, Proteome, Replicon, Rhodobacteraceae/*genetics/*metabolism, Transcriptome, Tropolone/analogs & derivatives | Proteome |
| 33750904 | A novel class of sulfur-containing aminolipids widespread in marine roseobacters. | Smith AF, Silvano E, Pauker O, Guillonneau R, Quareshy M, Murphy A, Mausz MA, Stirrup R, Rihtman B, Aguilo-Ferretjans M, Brandsma J, Petersen J, Scanlan DJ, Chen Y | ISME J | 10.1038/s41396-021-00933-x | 2021 | Ecosystem, Rhodobacteraceae, *Roseobacter/genetics, Sulfur | ||
| 35340012 | Luciferase-Based Determination of ATP/NAD(H) Pools in a Marine (Environmental) Bacterium. | Wunsch D, Scheve S, Weiten A, Kalvelage K, Rabus R | Microb Physiol | 10.1159/000522414 | 2022 | |||
| 35468615 | Nanomolar responsiveness of marine Phaeobacter inhibens DSM 17395 toward carbohydrates and amino acids. | Weiten A, Kalvelage K, Neumann-Schaal M, Buschen R, Scheve S, Winklhofer M, Rabus R | Microb Physiol | 10.1159/000524702 | 2022 | |||
| Biotechnology | 35801100 | Impact of Quorum Sensing and Tropodithietic Acid Production on the Exometabolome of Phaeobacter inhibens. | Srinivas S, Berger M, Brinkhoff T, Niggemann J | Front Microbiol | 10.3389/fmicb.2022.917969 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6947 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17395) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17395 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68369 | Automatically annotated from API 20NE | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |