Flavobacterium columnare (CIP 110012, LSU)

Name: Flavobacterium columnare (CIP 110012, LSU)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137085

Type strain

Strain Designation LSU

Culture col. no. CIP 110012 LSU

NCBI tax ID(s) 996

Special Collections CIP

History 2009, C. R. Arias, Auburn Univ., Alabama, USA: strain LSU CIP <- 2009, C.R. Arias, Auburn Univ., Alabama, USA: strain LSU

Links

Flavobacterium columnare LSU is a Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative rod-shaped Bacteria

Name and taxonomic classification

SI-ID 395560

CIP 110012

@ref 20215

Last LPSN update 2026-02-09 11:32:48

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium columnare

Full scientific name Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996

Synonyms (2)

Cytophaga columnaris
Flexibacter columnaris

BacDive ID	Other strains from **Flavobacterium columnare** (8)	Type strain
5551	F. columnare 1-S-2cl (Anacker 1956), DSM 18644, ATCC 23463, ... (type strain)
24020	F. columnare ALG-00-530, DSM 25092, CECT 7586
135758	F. columnare CIP 109951, JIP 14/00
139541	F. columnare CIP 103533, ATCC 49512
139542	F. columnare ALG-00-530, CIP 110013
139587	F. columnare CIP 103532, ATCC 49513
139662	F. columnare PH 97028, CIP 109753, JCM 21327, IAM 14821
163130	F. columnare JCM 21326, IAM 14820

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
36936	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36936	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
36936	CIP Medium 566			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
36936	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
36936	17632 ChEBI	nitrate	+	reduction
36936	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
36936	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36936	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
36936	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
36936	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
36936	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
36936		Louisiana	USA	USA	North America
36936	Animal, Catfish, Ictalurus punctatus	Louisiana	United States of America	USA	North America	1999

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36936	1	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36936	Collection of Institut Pasteur ; Curators of the CIP; CIP 110012
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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