Name: Flavobacterium columnare CIP 103532
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139587

Type strain:

Species: Flavobacterium columnare

Culture col. no.: CIP 103532, ATCC 49513

Strain history: CIP <- 1994, ATCC <- J.F. Bernardet, INRA, Jouy en Josas, France: strain TG 39/87, Flexibacter columnaris

NCBI tax ID(s): 996 (species)

SI-ID 42528

ATCC 49513, CIP 103532

Special Collections

Other strains from Flavobacterium columnare

Section

Flavobacterium columnare CIP 103532 is a Gram-negative, motile, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium columnare**
	Full Scientific Name (LPSN)	Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996

	Synonym	Cytophaga columnaris
	Synonym	Flexibacter columnaris

Information on morphological and physiological properties Morphology

[Ref.: #42079]	Gram stain	negative

[Ref.: #42079]	Cell shape	rod-shaped

[Ref.: #42079]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42079]

Culture medium

MEDIUM 34 - for Flavobacterium branchiophilum and Flavobacterium columnare

[Ref.: #42079]

Culture medium growth

[Ref.: #42079]

Culture medium composition

expand / minimize

[Ref.: #42079]

Culture medium

CIP Medium 566

[Ref.: #42079]

Culture medium growth

[Ref.: #42079]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #42079]

Culture medium

CIP Medium 72

[Ref.: #42079]

Culture medium growth

[Ref.: #42079]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #42079]		growth	22 °C
[Ref.: #42079]		growth	10-37 °C
[Ref.: #42079]	no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #42079]	nitrate ChEBI	+	reduction
[Ref.: #42079]	nitrite ChEBI	-	reduction
[Ref.: #42079]	sodium thiosulfate ChEBI	-	builds gas from

	Metabolite production	Metabolite	Production
[Ref.: #42079]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #42079]	beta-galactosidase	-	3.2.1.23
[Ref.: #42079]	catalase	+	1.11.1.6
[Ref.: #42079]	gelatinase	+
[Ref.: #42079]	oxidase	+
[Ref.: #42079]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42079]	Sample type/isolated from	Animal, Adult black bullhead, skin ulcer
[Ref.: #42079]	Geographic location (country and/or sea, region)	Longueville
[Ref.: #42079]	Country	France
[Ref.: #42079]	Country ISO 3 Code	FRA
[Ref.: #42079]	Continent	Europe
[Ref.: #42079]	Isolation date	1987

[Ref.: #42079]	Geographic location (country and/or sea, region)	Longueville
[Ref.: #42079]	Country	France
[Ref.: #42079]	Country ISO 3 Code	FRA
[Ref.: #42079]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42079]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Flavobacterium columnare 16S ribosomal RNA, partial sequence, strain: ATCC 49513 (= JIP 49/87).	AB023660	1477	GenBank ENA	996 tax ID	*
[Ref.: #124043]	Flavobacterium columnare DNA, 16S-23S intergenic spacer region, strain: ATCC 49513.	AB031219	638	GenBank ENA	996 tax ID	*

Availability in culture collections External links

[Ref.: #42079]

Culture collection no.

CIP 103532, ATCC 49513

[Ref.: #96061]

SI-ID 42528

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42079 Collection of Institut Pasteur ; Curators of the CIP; CIP 103532

#96061

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42528.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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