[Ref.: #7633] |
Sample type/isolated from |
Kidney of diseased salmon |
[Ref.: #7633] |
Geographic location (country and/or sea, region) |
Washington, Snake River |
[Ref.: #7633] |
Country |
USA |
[Ref.: #7633] |
Country ISO 3 Code |
USA |
[Ref.: #7633] |
Continent |
North America |
|
[Ref.: #67770] |
Sample type/isolated from |
Kidney of a diseased chinook salmon (Oncorhynchus tschawytscha) from the Snake River |
[Ref.: #67770] |
Host species |
Oncorhynchus tschawytscha |
[Ref.: #67770] |
Geographic location (country and/or sea, region) |
WA |
[Ref.: #67770] |
Country |
USA |
[Ref.: #67770] |
Country ISO 3 Code |
USA |
[Ref.: #67770] |
Continent |
North America |
|
[Ref.: #118709] |
Sample type/isolated from |
Animal, Salmon, kidney |
[Ref.: #118709] |
Geographic location (country and/or sea, region) |
Snake river, Washington |
[Ref.: #118709] |
Country |
United States of America |
[Ref.: #118709] |
Country ISO 3 Code |
USA |
[Ref.: #118709] |
Continent |
North America |
[Ref.: #118709] |
Isolation date |
1955 |
* marker position based on {}
|
|
Isolation sources categories |
#Host |
#Fishes |
#Salmonidae |
#Host Body-Site |
#Urogenital tract |
#Kidney |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 16S ribosomal RNA gene, partial sequence |
AY577821 |
517 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY754372 |
576 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-5 16S ribosomal RNA gene, partial sequence |
KC912647 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-14 16S ribosomal RNA gene, partial sequence |
KC912648 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-11 16S ribosomal RNA gene, partial sequence |
KC912649 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-16 16S ribosomal RNA gene, partial sequence |
KC912650 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-1 16S ribosomal RNA gene, partial sequence |
KC912651 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-7 16S ribosomal RNA gene, partial sequence |
KC912652 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-13 16S ribosomal RNA gene, partial sequence |
KC912653 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare strain ATCC 23463 clone GI-10 16S ribosomal RNA gene, partial sequence |
KC912654 |
1254 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare gene for 16S rRNA, partial sequence, strain: IAM 14301 (= NCMB 2248) |
AB010951 |
1478 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare DNA, 16S-23S intergenic spacer region, complete sequence |
AB030748 |
635 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare gene for 16S rRNA, strain:IFO 15943 |
AB078047 |
1471 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare gene for 16S rRNA, partial sequence, strain: NBRC 100251 |
AB681150 |
1441 |
|
996 tax ID |
* |
[Ref.: #20218] |
Flavobacterium columnare gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 2248 |
D12659 |
1256 |
|
996 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Flavobacterium columnare NBRC 100251 = ATCC 23463 |
GCA_007990835 |
contig |
|
1218111 tax ID |
* |
[Ref.: #66792] |
Flavobacterium columnare NBRC 100251 = ATCC 23463 |
GCA_002530675 |
scaffold |
|
1218111 tax ID |
* |
[Ref.: #66792] |
Flavobacterium columnare NBRC 100251 = ATCC 23463 |
1218111.3 |
wgs |
|
1218111 tax ID |
* |
[Ref.: #66792] |
Flavobacterium columnare strain ATCC 23463 |
996.48 |
wgs |
|
996 tax ID |
* |
[Ref.: #66792] |
Flavobacterium columnare strain ATCC 23463 |
996.64 |
wgs |
|
996 tax ID |
* |
|
|
-
Availability in culture collections External links
[Ref.: #7633] |
Culture collection no. |
DSM 18644, ATCC 23463, CIP 103531, JCM 21141, LMG 10406, LMG 13035, NBRC 100251, NCIMB 2248, IAM 14301, NCMB 1038 |
[Ref.: #75033] |
SI-ID 9858
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
The fish pathogen Flavobacterium columnare represents four distinct species: Flavobacterium columnare, Flavobacterium covae sp. nov., Flavobacterium davisii sp. nov. and Flavobacterium oreochromis sp. nov., and emended description of Flavobacterium columnare. |
LaFrentz BR, Kralova S, Burbick CR, Alexander TL, Phillips CW, Griffin MJ, Waldbieser GC, Garcia JC, de Alexandre Sebastiao F, Soto E, Loch TP, Liles MR, Snekvik KR |
Syst Appl Microbiol |
10.1016/j.syapm.2021.126293 |
2021 |
* |
Pathogenicity |
Prophages and Past Prophage-Host Interactions Revealed by CRISPR Spacer Content in a Fish Pathogen. |
Laanto E, Ravantti JJ, Sundberg LR |
Microorganisms |
10.3390/microorganisms8121919 |
2020 |
* |
Cultivation |
Improved method for determining antibiotic susceptibility of Flavobacterium columnare isolates by broth microdilution. |
Darwish AM, Farmer BD, Hawke JP |
J Aquat Anim Health |
10.1577/H07-047.1 |
2008 |
* |
Phylogeny |
Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil. |
Weon HY, Song MH, Son JA, Kim BY, Kwon SW, Go SJ, Stackebrandt E |
Int J Syst Evol Microbiol |
10.1099/ijs.0.64935-0 |
2007 |
* |
Phylogeny |
Molecular diversity and growth features of Flavobacterium columnare strains isolated in Finland. |
Suomalainen LR, Kunttu H, Valtonen ET, Hirvela-Koski V, Tiirola M |
Dis Aquat Organ |
10.3354/dao070055 |
2006 |
* |
Phylogeny |
Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment. |
Wang ZW, Liu YH, Dai X, Wang BJ, Jiang CY, Liu SJ |
Int J Syst Evol Microbiol |
10.1099/ijs.0.64065-0 |
2006 |
* |
|
Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections. |
Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR |
Appl Microbiol Biotechnol |
10.1007/s00253-015-6476-6 |
2015 |
* |
|
Systemic and mucosal antibody response in tilapia, Oreochromis niloticus (L.), following immunization with Flavobacterium columnare. |
Grabowski LD, LaPatra SE, Cain KD |
J Fish Dis |
10.1111/j.1365-2761.2004.00576.x |
2004 |
* |
|
- References
-
#7633 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 18644
|
-
-
-
#40693 |
; Curators of the CIP;
|
-
#43343 |
;
4:
140 - 168
ISBN 978
(
DOI 10.1007/978-0-387-68572-4 )
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#75033 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID9858.1 )
|
-
#118709 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103531
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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