Flavobacterium columnare (DSM 18644, ATCC 23463, CIP 103531)

Name: Flavobacterium columnare (DSM 18644, ATCC 23463, CIP 103531)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5551

Type strain

Strain Designation 1-S-2cl (Anacker 1956)

Culture col. no. DSM 18644 ATCC 23463 CIP 103531 JCM 21141 LMG 10406 6 more

NCBI tax ID(s) 1218111 996

Special Collections DSMZ JCM CIP

History DSMZ <- CIP <- E. J. Ordal, Univ. of Washington, Seattle, USA; 1-S-2cl (Anacker 1956) JCM <-- IAM 14301 <-- NCIMB 2248 <-- E. J. Ordal I-S-2cl. CIP <- 1993, NCIMB <- E.J. Ordal, Washington Univ., Seattle, USA: strain 1-S-2cl, Cytophaga columnaris

Links

Flavobacterium columnare 1-S-2cl is a motile, rod-shaped animal pathogen that forms rhizoid colonies and was isolated from Kidney of diseased salmon.

motile rod-shaped colony-forming animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 9858

LMG 10406,ATCC 23463,LMG 13035,NCIMB 1038,NCIMB 2248,NCMB 1038,CCUG 35197,CIP 103531,IFO 15943,IAM 14301,NCMB 2248,NBRC 100251,DSM 18644,JCM 21141

@ref 20215

Last LPSN update 2026-05-29 08:26:12

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium columnare

Full scientific name Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996

Synonyms (2)

Cytophaga columnaris
Flexibacter columnaris

BacDive ID	Other strains from **Flavobacterium columnare** (8)	Type strain
24020	F. columnare ALG-00-530, DSM 25092, CECT 7586
135758	F. columnare CIP 109951, JIP 14/00
137085	F. columnare LSU, CIP 110012
139541	F. columnare CIP 103533, ATCC 49512
139542	F. columnare ALG-00-530, CIP 110013
139587	F. columnare CIP 103532, ATCC 49513
139662	F. columnare PH 97028, CIP 109753, JCM 21327, IAM 14821
163130	F. columnare JCM 21326, IAM 14820

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Flagellum arrangement	Gram stain	Confidence
43343	3-10 µm	0.3-0.5 µm	rod-shaped	gliding
118709			rod-shaped		negative
125438						95.5
125438					negative	97.141
125439					negative	99.601

Colony morphology

@ref	Colony color	Colony shape	Medium used
43343	greenish-yellow	rhizoid	Anacker and Ordal's agar

Pigmentation

@ref	Production	Name
43343		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7633	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
7633	ENRICHED CYTOPHAGA AGAR MEDIUM (DSMZ Medium 1133)	Medium recipe at MediaDive	Name: ENRICHED CYTOPHAGA AGAR MEDIUM (DSMZ Medium 1133) Composition: Agar 15.0 g/l Tryptone 2.0 g/l Yeast extract 0.5 g/l Beef extract 0.5 g/l Sodium acetate 0.2 g/l Distilled water
40693	MEDIUM 34 - for Flavobacterium branchiophilum and Flavobacterium columnare		Distilled water make up to (1000.000 ml);Agar (10.000 g);Yeast extract (0.500 g);Sodium acetate (0.200 g);Tryptone (0.500 g);Beef extract (0.200 g)
43343	Anacker and Ordal's agar
118709	CIP Medium 566	Medium recipe at CIP
43343	Marine agar (MA)
43343	Tryptic Soy Agar

Culture temp

@ref	Growth	Type	Temperature (°C)
7633	positive	growth	15
40693	positive	growth	22
43343	positive	optimum	25-30
43343	positive	growth	15-37
67770	positive	growth	20
118709	positive	growth	15-30
118709	negative	growth	5
118709	negative	growth	10
118709	negative	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.754

Spore formation

@ref	Type of spore	Confidence
43343	endospore
125439		99.951
125438		90.709

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43343	NaCl	positive	growth	0-0.5 %(w/v)
43343	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43343	2509 ChEBI	agar	-	degradation
43343	28938 ChEBI	ammonium	-	nitrogen source
43343	85146 ChEBI	carboxymethylcellulose	-	degradation
43343		casein	+	degradation
43343	17029 ChEBI	chitin	-	degradation
43343	16991 ChEBI	dna	+	degradation
43343	4853 ChEBI	esculin	-	degradation
118709	4853 ChEBI	esculin	-	hydrolysis
43343	5291 ChEBI	gelatin	+	degradation
43343	17234 ChEBI	glucose	-	assimilation
43343	17632 ChEBI	nitrate	-	nitrogen source
118709	17632 ChEBI	nitrate	-	reduction
118709	16301 ChEBI	nitrite	-	reduction
118709	132112 ChEBI	sodium thiosulfate	+	builds gas from
43343	28017 ChEBI	starch	+	degradation
43343	53424 ChEBI	tween 20	+	degradation
43343	53423 ChEBI	tween 40	+	degradation
43343	53425 ChEBI	tween 60	+	degradation
43343	53426 ChEBI	tween 80	+	degradation
43343	16199 ChEBI	urea	-	degradation

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118709	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43343	16136 ChEBI	hydrogen sulfide
118709	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
118709	alcohol dehydrogenase	-	1.1.1.1
118709	amylase	-
43343	arginine dihydrolase	-	3.5.3.6
43343	beta-galactosidase	-	3.2.1.23
118709	beta-galactosidase	-	3.2.1.23
118709	caseinase	+	3.4.21.50
43343	catalase	+	1.11.1.6
118709	catalase	+	1.11.1.6
43343	cytochrome oxidase	+	1.9.3.1
118709	DNase	-
118709	gamma-glutamyltransferase	+	2.3.2.2
118709	gelatinase	+
118709	lecithinase	-
118709	lipase	-
43343	lysine decarboxylase	-	4.1.1.18
118709	lysine decarboxylase	-	4.1.1.18
43343	ornithine decarboxylase	-	4.1.1.17
118709	ornithine decarboxylase	-	4.1.1.17
118709	oxidase	-
118709	urease	-	3.5.1.5

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118709	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Urogenital tract	#Kidney

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7633	Kidney of diseased salmon		Washington, Snake River	USA	USA	North America
67770	Kidney of a diseased chinook salmon (Oncorhynchus tschawytscha) from the Snake River	Oncorhynchus tschawytscha	WA	USA	USA	North America
118709	Animal, Salmon, kidney		Snake river, Washington	United States of America	USA	North America	1955

Taxonmaps

69479

Global distribution of 16S sequence KC912654 (>99% sequence identity) for Flavobacterium columnare subclade from Microbeatlas

Aquatic Samples	4062
Soil Samples	1205
Animal Samples	1474
Plant Samples	349
Total Samples	7090

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
7633		1	Risk group (German classification) According to TRBA 466
118709		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM253067v1 assembly for Flavobacterium columnare NBRC 100251 = ATCC 23463	scaffold	GCA_002530675	996.64	8116534135	1218111	41.01
66792	ASM799083v1 assembly for Flavobacterium columnare NBRC 100251 = ATCC 23463	contig	GCA_007990835	1218111.3		1218111	38.66
124043	ASM4053885v1 assembly for Flavobacterium columnare DSM 18644	contig	GCA_040538855			996	25.96
124043	ASM221724v1 assembly for Flavobacterium columnare NBRC 100251 = ATCC 23463	scaffold	GCA_002217245	996.48		1218111	10.04

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Flavobacterium columnare strain ATCC 23463 16S ribosomal RNA gene, partial sequence	AY577821	517	996
20218	Flavobacterium columnare strain ATCC 23463 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY754372	576	996
20218	Flavobacterium columnare gene for 16S rRNA, partial sequence, strain: IAM 14301 (= NCMB 2248)	AB010951	1478	996
20218	Flavobacterium columnare DNA, 16S-23S intergenic spacer region, complete sequence	AB030748	635	996
20218	Flavobacterium columnare gene for 16S rRNA, strain:IFO 15943	AB078047	1471	996
20218	Flavobacterium columnare gene for 16S rRNA, partial sequence, strain: NBRC 100251	AB681150	1441	996
20218	Flavobacterium columnare gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 2248	D12659	1256	996

GC content

@ref	GC-content (mol%)	Method
7633	32
43343	32-33	thermal denaturation, midpoint method (Tm)
67770	30	Buoyant density centrifugation (BD)
67770	32	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM253067v1 assembly for Flavobacterium columnare NBRC 100251 = ATCC 23463
BV-BRC: 996.64

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.75	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	motility	BacteriaNetⓘ	yes	42.27	no
125439	spore_formation	BacteriaNetⓘ	no	99.95	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium columnare NBRC 100251 = ATCC 23463 ATCC 23463
NCBI: GCA_002530675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.14	no
125438	anaerobic	anaerobicⓘ	no	96.65	no
125438	aerobic	aerobicⓘ	yes	83.20	no
125438	spore-forming	spore-formingⓘ	no	90.71	no
125438	thermophilic	thermophileⓘ	no	96.12	yes
125438	flagellated	motile2+ⓘ	no	95.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genomic analysis of Flavobacterium species causing columnaris disease of freshwater fish in Thailand: insights into virulence and resistance mechanisms.	Nguyen DHM, Chokmangmeepisarn P, Khianchaikhan K, Morishita M, Uchuwittayakul A, LaFrentz BR, Rodkhum C.	BMC Vet Res	10.1186/s12917-025-04488-3	2025
Genetics	Genomic evidence of genetic diversity and functional evolution in Flavobacterium columnare.	Han R, Hong Y, Xu R, Guo W, Zhang M, Lu Z, Han Q, Mo Z, Dan X, Li Y.	Front Microbiol	10.3389/fmicb.2023.1240471	2023
	Flavobacterium columnare ferric iron uptake systems are required for virulence.	Conrad RA, Evenhuis JP, Lipscomb RS, Perez-Pascual D, Stevick RJ, Birkett C, Ghigo JM, McBride MJ.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1029833	2022
	Investigation of the Genus Flavobacterium as a Reservoir for Fish-Pathogenic Bacterial Species: the Case of Flavobacterium collinsii.	Lee BH, Nicolas P, Saticioglu IB, Fradet B, Bernardet JF, Rigaudeau D, Rochat T, Duchaud E.	Appl Environ Microbiol	10.1128/aem.02162-22	2023
Phylogeny	Identification of Four Distinct Phylogenetic Groups in Flavobacterium columnare With Fish Host Associations.	LaFrentz BR, Garcia JC, Waldbieser GC, Evenhuis JP, Loch TP, Liles MR, Wong FS, Chang SF.	Front Microbiol	10.3389/fmicb.2018.00452	2018
	Adaptive response to starvation in the fish pathogen Flavobacterium columnare: cell viability and ultrastructural changes.	Arias CR, Lafrentz S, Cai W, Olivares-Fuster O.	BMC Microbiol	10.1186/1471-2180-12-266	2012
Enzymology	Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays.	Warsen AE, Krug MJ, LaFrentz S, Stanek DR, Loge FJ, Call DR.	Appl Environ Microbiol	10.1128/aem.70.7.4216-4221.2004	2004
Enzymology	Simultaneous detection of Aeromonas salmonicida, Flavobacterium psychrophilum, and Yersinia ruckeri, three major fish pathogens, by multiplex PCR.	Del Cerro A, Marquez I, Guijarro JA.	Appl Environ Microbiol	10.1128/aem.68.10.5177-5180.2002	2002
	LolA and LolB are conserved in Bacteroidota and are crucial for gliding motility and Type IX secretion.	De Smet T, Baland E, Giovannercole F, Mignon J, Lizen L, Dugauquier R, Lauber F, Dieu M, Lima-Mendez G, Michaux C, Devos D, Renzi F.	Commun Biol	10.1038/s42003-025-07817-2	2025
	Structural elucidation of a novel phosphoglycolipid isolated from six species of Halomonas.	Giordano A, Vella FM, Romano I, Gambacorta A.	J Lipid Res	10.1194/jlr.m700152-jlr200	2007
Enzymology	Phage specificity of the freshwater fish pathogen Flavobacterium columnare.	Laanto E, Sundberg LR, Bamford JK.	Appl Environ Microbiol	10.1128/aem.05574-11	2011
Pathogenicity	Prophages and Past Prophage-Host Interactions Revealed by CRISPR Spacer Content in a Fish Pathogen.	Laanto E, Ravantti JJ, Sundberg LR	Microorganisms	10.3390/microorganisms8121919	2020
	Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.	Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR	Appl Microbiol Biotechnol	10.1007/s00253-015-6476-6	2015
Cultivation	Improved method for determining antibiotic susceptibility of Flavobacterium columnare isolates by broth microdilution.	Darwish AM, Farmer BD, Hawke JP	J Aquat Anim Health	10.1577/H07-047.1	2008
Phylogeny	Molecular diversity and growth features of Flavobacterium columnare strains isolated in Finland.	Suomalainen LR, Kunttu H, Valtonen ET, Hirvela-Koski V, Tiirola M	Dis Aquat Organ	10.3354/dao070055	2006
	Systemic and mucosal antibody response in tilapia, Oreochromis niloticus (L.), following immunization with Flavobacterium columnare.	Grabowski LD, LaPatra SE, Cain KD	J Fish Dis	10.1111/j.1365-2761.2004.00576.x	2004
Phylogeny	Caulobacter daechungensis sp. nov., a stalked bacterium isolated from a eutrophic reservoir.	Jin L, Lee HG, Kim HS, Ahn CY, Oh HM.	Int J Syst Evol Microbiol	10.1099/ijs.0.048884-0	2013
Phylogeny	The fish pathogen Flavobacterium columnare represents four distinct species: Flavobacterium columnare, Flavobacterium covae sp. nov., Flavobacterium davisii sp. nov. and Flavobacterium oreochromis sp. nov., and emended description of Flavobacterium columnare.	LaFrentz BR, Kralova S, Burbick CR, Alexander TL, Phillips CW, Griffin MJ, Waldbieser GC, Garcia JC, de Alexandre Sebastiao F, Soto E, Loch TP, Liles MR, Snekvik KR	Syst Appl Microbiol	10.1016/j.syapm.2021.126293	2021
Phylogeny	Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil.	Weon HY, Song MH, Son JA, Kim BY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64935-0	2007
Phylogeny	Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment.	Wang ZW, Liu YH, Dai X, Wang BJ, Jiang CY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64065-0	2006

References

#7633	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18644
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40693	; Curators of the CIP;
#43343	; 4: 140 - 168 ISBN 978 ( DOI 10.1007/978-0-387-68572-4 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118709	Collection of Institut Pasteur ; Curators of the CIP; CIP 103531
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Flavobacterium columnare (DSM 18644, ATCC 23463, CIP 103531)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002530675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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