Strain identifier

BacDive ID: 137085

Type strain: No

Species: Flavobacterium columnare

Strain Designation: LSU

Strain history: CIP <- 2009, C.R. Arias, Auburn Univ., Alabama, USA: strain LSU

NCBI tax ID(s): 996 (species)

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General

@ref: 36936

BacDive-ID: 137085

keywords: Bacteria, mesophilic, Gram-negative, rod-shaped

description: Flavobacterium columnare LSU is a mesophilic, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 996
  • Matching level: species

strain history

@refhistory
369362009, C. R. Arias, Auburn Univ., Alabama, USA: strain LSU
36936CIP <- 2009, C.R. Arias, Auburn Univ., Alabama, USA: strain LSU

doi: 10.13145/bacdive137085.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium columnare
  • full scientific name: Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996

  • synonyms

    @refsynonym
    20215Cytophaga columnaris
    20215Flexibacter columnaris

@ref: 36936

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium columnare

strain designation: LSU

type strain: no

Morphology

cell morphology

  • @ref: 36936
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36936MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
36936CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

  • @ref: 36936
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3693617632nitrate+reduction
3693616301nitrite-reduction

metabolite production

  • @ref: 36936
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36936oxidase+
36936catalase+1.11.1.6
36936urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36936-+++-+----++--------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36936LouisianaUSAUSANorth America
36936LouisianaUnited States of AmericaUSANorth AmericaAnimal, Catfish, Ictalurus punctatus1999

Safety information

risk assessment

  • @ref: 36936
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36936

culture collection no.: CIP 110012

straininfo link

  • @ref: 94059
  • straininfo: 395560

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36936Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110012Collection of Institut Pasteur (CIP 110012)
68382Automatically annotated from API zym
94059Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID395560.1