Name: Lentibacillus jeotgali Grbi
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1367

Type strain:

Species: Lentibacillus jeotgali

Strain Designation: Grbi

Culture col. no.: DSM 23924, JCM 15795, KCTC 13300

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 558169 (species)

SI-ID 403619

DSM 23924

Special Collections

Section

Lentibacillus jeotgali Grbi is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from traditional Korean fermented seafood made from scallops, "Garibi-jeotgal".

colony-forming
Gram-positive
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Lentibacillus*
	Species	**Lentibacillus jeotgali**
	Full Scientific Name (LPSN)	Lentibacillus jeotgali Jung et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23004]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #23004]	Cell length	2.0-4.0 µm

[Ref.: #23004]	Cell width	0.5-1.0 µm

[Ref.: #23004]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #23004]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #23004]	Colony size	1.0-2.0 mm
[Ref.: #23004]	Colony color	opaque ivory
[Ref.: #23004]	Colony shape	circular
[Ref.: #23004]	Incubation period	3 days
[Ref.: #23004]	Cultivation medium used	MA supplemented with 10 % (w/v) NaCl

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17307]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17307]

Culture medium growth

[Ref.: #17307]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17307]

Culture medium composition

expand / minimize

[Ref.: #23004]

Culture medium

MA supplemented with 10 % (w/v) NaCl

[Ref.: #23004]

Culture medium growth

		Temperature
[Ref.: #23004]	growth	10.0-45.0 °C
[Ref.: #23004]	optimum	37.0 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #23004]			optimum	8.0
[Ref.: #23004]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23004]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #23004]	Spore description	single,terminal,spherical,in swollen sporangia
[Ref.: #23004]	Type of spore	endospore
[Ref.: #23004]	Ability of spore formation	yes

[Ref.: #23004]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23004]		NaCl		growth	3.0-20.0	%(w/v)
[Ref.: #23004]		NaCl		optimum	10.0-15.0	%

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23004]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #23004]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23004]	amygdalin ChEBI	-	builds acid from
[Ref.: #23004]	arbutin ChEBI	+	builds acid from
[Ref.: #23004]	arginine ChEBI	-	hydrolysis
[Ref.: #23004]	casein	-	hydrolysis
[Ref.: #23004]	cellobiose ChEBI	-	builds acid from
[Ref.: #23004]	cellulose ChEBI	-	hydrolysis
[Ref.: #23004]	D-arabinose ChEBI	-	builds acid from
[Ref.: #23004]	D-arabitol ChEBI	-	builds acid from
[Ref.: #23004]	D-fructose ChEBI	+	builds acid from
[Ref.: #23004]	D-fucose ChEBI	-	builds acid from
[Ref.: #23004]	D-galactose ChEBI	+	builds acid from
[Ref.: #23004]	D-glucose ChEBI	+	builds acid from
[Ref.: #23004]	D-lyxose ChEBI	-	builds acid from
[Ref.: #23004]	D-mannitol ChEBI	+	builds acid from
[Ref.: #23004]	D-mannose ChEBI	-	builds acid from
[Ref.: #23004]	D-ribose ChEBI	+	builds acid from
[Ref.: #23004]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #23004]	D-tagatose ChEBI	-	builds acid from
[Ref.: #23004]	D-xylose ChEBI	-	builds acid from
[Ref.: #23004]	dna ChEBI	-	hydrolysis
[Ref.: #23004]	erythritol ChEBI	-	builds acid from
[Ref.: #23004]	esculin ChEBI	+	builds acid from
[Ref.: #23004]	esculin ChEBI	+	hydrolysis
[Ref.: #23004]	galactitol ChEBI	-	builds acid from
[Ref.: #23004]	gelatin ChEBI	-	hydrolysis
[Ref.: #23004]	gentiobiose ChEBI	-	builds acid from
[Ref.: #23004]	gluconate ChEBI	-	builds acid from
[Ref.: #23004]	glycerol ChEBI	+	builds acid from
[Ref.: #23004]	glycogen ChEBI	+	builds acid from
[Ref.: #23004]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #23004]	inulin ChEBI	+	builds acid from
[Ref.: #23004]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23004]	L-arabitol ChEBI	-	builds acid from
[Ref.: #23004]	L-fucose ChEBI	-	builds acid from
[Ref.: #23004]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #23004]	L-sorbose ChEBI	-	builds acid from
[Ref.: #23004]	L-xylose ChEBI	-	builds acid from
[Ref.: #23004]	lactose ChEBI	-	builds acid from
[Ref.: #23004]	maltose ChEBI	+	builds acid from
[Ref.: #23004]	melezitose ChEBI	-	builds acid from
[Ref.: #23004]	melibiose ChEBI	-	builds acid from
[Ref.: #23004]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #23004]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #23004]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #23004]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23004]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #23004]	raffinose ChEBI	-	builds acid from
[Ref.: #23004]	ribitol ChEBI	-	builds acid from
[Ref.: #23004]	salicin ChEBI	-	builds acid from
[Ref.: #23004]	starch ChEBI	-	builds acid from
[Ref.: #23004]	starch ChEBI	-	hydrolysis
[Ref.: #23004]	sucrose ChEBI	-	builds acid from
[Ref.: #23004]	trehalose ChEBI	-	builds acid from
[Ref.: #23004]	turanose ChEBI	-	builds acid from
[Ref.: #23004]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23004]	tyrosine ChEBI	-	hydrolysis
[Ref.: #23004]	xanthine ChEBI	-	hydrolysis
[Ref.: #23004]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #23004]	catalase	+	1.11.1.6
[Ref.: #23004]	cytochrome oxidase	-	1.9.3.1
[Ref.: #23004]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17307]	Sample type/isolated from	traditional Korean fermented seafood made from scallops, "Garibi-jeotgal"
[Ref.: #17307]	Country	Republic of Korea
[Ref.: #17307]	Country ISO 3 Code	KOR
[Ref.: #17307]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Jeotgal, traditional Korean fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Garibi-jeotgal, traditional Korean fermented seafood made from scallops
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #23004]	Enrichment culture	marine 2216 agar (MA; BBL) plates supplemented with 20 % (w/v) NaCl
[Ref.: #23004]	Enrichment culture temperature	30.0 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ182050 (>99% sequence identity) for Lentibacillus jeotgali from Microbeatlas

Aquatic Samples	14
Soil Samples	26
Animal Samples	122
Plant Samples	2
Total Samples	164

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17307]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17307]	Lentibacillus jeotgali strain Grbi 16S ribosomal RNA gene, partial sequence	FJ182050	1414	GenBank ENA	558169 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lentibacillus jeotgali Grbi	GCA_000224785	contig	GenBank ENA	558169 tax ID
[Ref.: #66792]	Lentibacillus jeotgali Grbi	2548876534	draft	JGI IMG/M	558169 tax ID	*

[Ref.: #17307]	GC-content	42.5 mol%	fluorimetric
[Ref.: #67770]	GC-content	42.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	42.5 mol%

Availability in culture collections External links

[Ref.: #17307]

Culture collection no.

DSM 23924, JCM 15795, KCTC 13300

[Ref.: #71018]

SI-ID 403619

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lentibacillus amyloliquefaciens sp. nov., a halophilic bacterium isolated from saline sediment sample.	Wang JL, Ma KD, Wang YW, Wang HM, Li YB, Zhou S, Chen XR, Kong DL, Guo X, He MX, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-015-0618-9	2015	*
Phylogeny	Lentibacillus jeotgali sp. nov., a halophilic bacterium isolated from traditional Korean fermented seafood.	Jung MJ, Roh SW, Kim MS, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.013565-0	2009	*

References

#17307

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23924

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23004

Mi-Ja Jung,Seong Woon Roh,Min-Soo Kim,Jin-Woo Bae: Lentibacillus jeotgali sp. nov., a halophilic bacterium isolated from traditional Korean fermented seafood. IJSEM 60: 1017 - 1022 2010 ( DOI 10.1099/ijs.0.013565-0 , PubMed 19666788 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71018

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403619.1 )

* These data were automatically processed and therefore are not curated

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