Name: Saccharopolyspora gloriosae DSM 45582
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13473

Type strain:

Species: Saccharopolyspora gloriosae

Culture col. no.: DSM 45582, CCTCC AA 207006, KCTC 19243, YIM 60513, JCM 30582, BCRC 16909

Strain history: <- HH Chen, Yunnan Inst. Microbiol., China

NCBI tax ID(s): 455344 (species)

SI-ID 407718

DSM 45582

Special Collections

Section

Saccharopolyspora gloriosae DSM 45582 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from surface-sterilzied stem of Gloriosa superba L..

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora gloriosae**
	Full Scientific Name (LPSN)	Saccharopolyspora gloriosae Qin et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29555]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.581

[Ref.: #29555]	Motility	no

[Ref.: #21436]	Colony color	Ivory (1014)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	ISP 2

[Ref.: #21436]	Colony color	Light ivory (1015)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	ISP 3

[Ref.: #21436]	Colony color	Light ivory (1015)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	ISP 4

[Ref.: #21436]	Colony color	Light ivory (1015)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	ISP 5

[Ref.: #21436]	Colony color	Oyster white (1013)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	ISP 6

[Ref.: #21436]	Colony color	Ivory (1014)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	ISP 7

[Ref.: #21436]	Colony color	Beige (1001)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	Suter with tyrosine

[Ref.: #21436]	Colony color	Ivory (1014)
[Ref.: #21436]	Incubation period	10-14 days
[Ref.: #21436]	Cultivation medium used	Suter without tyrosine

[Ref.: #29555]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17711]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #17711]

Culture medium growth

[Ref.: #17711]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17711]

Culture medium composition

expand / minimize

[Ref.: #21436]

Culture medium

ISP 2

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

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[Ref.: #21436]

Culture medium

ISP 3

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

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[Ref.: #21436]

Culture medium

ISP 4

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

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[Ref.: #21436]

Culture medium

ISP 5

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

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[Ref.: #21436]

Culture medium

ISP 6

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

expand / minimize

[Ref.: #21436]

Culture medium

ISP 7

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

expand / minimize

[Ref.: #21436]

Culture medium

Suter with tyrosine

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

expand / minimize

[Ref.: #21436]

Culture medium

Suter without tyrosine

[Ref.: #21436]

Culture medium growth

[Ref.: #21436]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17711]	growth	28 °C
[Ref.: #29555]	growth	10-32 °C
[Ref.: #29555]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28-37 °C

	pH	Kind of pH		pH
[Ref.: #29555]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29555]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29555]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #21436]	NaCl	maximum	10	%
[Ref.: #29555]	NaCl	growth	0-11	%
[Ref.: #29555]	NaCl	optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21436]	arabinose ChEBI	+
[Ref.: #29555]	arabinose ChEBI	+	carbon source
[Ref.: #29555]	cellobiose ChEBI	+	carbon source
[Ref.: #21436]	cellulose ChEBI	-
[Ref.: #21436]	fructose ChEBI	+
[Ref.: #29555]	fructose ChEBI	+	carbon source
[Ref.: #21436]	glucose ChEBI	+
[Ref.: #29555]	glucose ChEBI	+	carbon source
[Ref.: #29555]	glycerol ChEBI	+	carbon source
[Ref.: #29555]	glycogen ChEBI	+	carbon source
[Ref.: #29555]	L-arabitol ChEBI	+	carbon source
[Ref.: #29555]	maltose ChEBI	+	carbon source
[Ref.: #29555]	mannitol ChEBI	+	carbon source
[Ref.: #21436]	mannose ChEBI	+
[Ref.: #29555]	mannose ChEBI	+	carbon source
[Ref.: #21436]	myo-inositol ChEBI	-
[Ref.: #21436]	raffinose ChEBI	-
[Ref.: #21436]	rhamnose ChEBI	+
[Ref.: #29555]	rhamnose ChEBI	+	carbon source
[Ref.: #29555]	ribitol ChEBI	+	carbon source
[Ref.: #21436]	sucrose ChEBI	+
[Ref.: #29555]	trehalose ChEBI	+	carbon source
[Ref.: #21436]	xylose ChEBI	+
[Ref.: #29555]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21436]	1073	not determinedn.d.	+	+	+	+	+	+/-	-	-	+/-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17711]	Sample type/isolated from	surface-sterilzied stem of Gloriosa superba L.
[Ref.: #17711]	Geographic location (country and/or sea, region)	Yunnan Province, rainforest of Xishuangbanna
[Ref.: #17711]	Country	China
[Ref.: #17711]	Country ISO 3 Code	CHN
[Ref.: #17711]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Stem of Gloriosa superba L. (a traditional Chinese medicinal plant) from tropical rainforest at Xishuangbanna
[Ref.: #67770]	Host species	Gloriosa superba
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU005371 (>99% sequence identity) for Saccharopolyspora gloriosae subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	179
Animal Samples	691
Plant Samples	41
Total Samples	972

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17711]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #21436]	Biosafety level	L1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17711]	Saccharopolyspora gloriosae strain YIM 60513 16S ribosomal RNA gene, partial sequence	EU005371	1456	GenBank ENA	455344 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharopolyspora gloriosae DSM 45582	GCA_014203325	contig	GenBank ENA	455344 tax ID	*
[Ref.: #66792]	Saccharopolyspora gloriosae strain DSM 45582	455344.3	wgs	PATRIC	455344 tax ID	*
[Ref.: #66792]	Saccharopolyspora gloriosae DSM 45582	2863061853	draft	JGI IMG/M	455344 tax ID	*

[Ref.: #17711]	GC-content	71.6 mol%
[Ref.: #67770]	GC-content	71.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharopolyspora gloriosae strain DSM 45582 PATRIC: 455344.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharopolyspora gloriosae strain DSM 45582 PATRIC: 455344.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.581	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.428	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	80.797	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.216	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.478	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.6	yes

Availability in culture collections External links

[Ref.: #17711]

Culture collection no.

DSM 45582, CCTCC AA 207006, KCTC 19243, YIM 60513, JCM 30582, BCRC 16909

[Ref.: #82665]

SI-ID 407718

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora cavernae sp. nov., a novel actinomycete isolated from the Swallow Cave in Yunnan, south-west China.	Cheng J, Zhang YG, Chen W, Li L, Zhang DF, Wang HF, Lu XH, Duan YQ, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-9996-z	2013	*
Phylogeny	Saccharopolyspora gloriosae sp. nov., an endophytic actinomycete isolated from the stem of Gloriosa superba L.	Qin S, Chen HH, Klenk HP, Kim CJ, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.015792-0	2009	*

References

#17711

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45582

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21436

Wink, J.: Compendium of Actinobacteria . HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29555

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25950 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82665

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407718.1 )

#25950

IJSEM 1147 2010 ( DOI 10.1099/ijs.0.015792-0 , PubMed 19666795 )

* These data were automatically processed and therefore are not curated

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Saccharopolyspora gloriosae strain DSM 45582

Saccharopolyspora gloriosae strain DSM 45582

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