Name: Saccharopolyspora tripterygii DSM 45269
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13472

Type strain:

Species: Saccharopolyspora tripterygii

Culture col. no.: DSM 45269, CCTCC AA 208062, YIM 65359, JCM 32123

Strain history: CCTCC AA 208062 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 65359.

NCBI tax ID(s): 566024 (species)

SI-ID 398280

DSM 45269

Special Collections

Section

Saccharopolyspora tripterygii DSM 45269 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from plant.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora tripterygii**
	Full Scientific Name (LPSN)	Saccharopolyspora tripterygii Li et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29370]	Gram stain	positive

[Ref.: #29370]	Cell length	1.25 µm

[Ref.: #29370]	Cell width	0.65 µm

[Ref.: #29370]	Cell shape	rod-shaped

[Ref.: #29370]	Motility	no

[Ref.: #29370]

Pigment production

Multimedia content

[Ref.: #16077]

Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16077]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16077]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16077]

Culture medium composition

expand / minimize

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #16077]

Culture medium growth

[Ref.: #16077]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16077]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16077]	growth	28 °C
[Ref.: #29370]	growth	10-37 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29370]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29370]

Oxygen tolerance

aerobe

[Ref.: #29370]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29370]		NaCl		growth	0-12	%

[Ref.: #29370]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29370]	acetate ChEBI	+	carbon source
[Ref.: #29370]	arabinose ChEBI	+	carbon source
[Ref.: #29370]	arginine ChEBI	+	carbon source
[Ref.: #29370]	citrate ChEBI	+	carbon source
[Ref.: #29370]	esculin ChEBI	+	hydrolysis
[Ref.: #29370]	fructose ChEBI	+	carbon source
[Ref.: #29370]	galactose ChEBI	+	carbon source
[Ref.: #29370]	glucose ChEBI	+	carbon source
[Ref.: #29370]	lactose ChEBI	+	carbon source
[Ref.: #29370]	maltose ChEBI	+	carbon source
[Ref.: #29370]	mannitol ChEBI	+	carbon source
[Ref.: #29370]	raffinose ChEBI	+	carbon source
[Ref.: #29370]	sodium citrate ChEBI	+	carbon source
[Ref.: #29370]	tween 20 ChEBI	+	carbon source
[Ref.: #29370]	tween 40 ChEBI	+	carbon source
[Ref.: #29370]	urea ChEBI	+	carbon source
[Ref.: #29370]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29370]		catalase	+	1.11.1.6
[Ref.: #29370]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16077]	Sample type/isolated from	plant
[Ref.: #16077]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #16077]	Country	China
[Ref.: #16077]	Country ISO 3 Code	CHN
[Ref.: #16077]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized stem of Tripterygium hypoglaucum from Yunnan Province
[Ref.: #67770]	Host species	Tripterygium hypoglaucum
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ214364 (>99% sequence identity) for Saccharopolyspora from Microbeatlas

Aquatic Samples	16
Soil Samples	97
Animal Samples	186
Plant Samples	20
Total Samples	319

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16077]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16077]	Saccharopolyspora tripterygii strain YIM 65359 16S ribosomal RNA gene, partial sequence	FJ214364	1418	GenBank ENA	566024 tax ID

[Ref.: #16077]	GC-content	70.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29370]	GC-content	70.5 mol%

Availability in culture collections External links

[Ref.: #16077]

Culture collection no.

DSM 45269, CCTCC AA 208062, YIM 65359, JCM 32123

[Ref.: #82664]

SI-ID 398280

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora rhizosphaerae sp. nov., an actinomycete isolated from rhizosphere soil in Thailand.	Intra B, Euanorasetr J, Take A, Inahashi Y, Mori M, Panbangred W, Matsumoto A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003307	2019	*
Phylogeny	Saccharopolyspora spongiae sp. nov., a novel actinomycete isolated from the marine sponge Scopalina ruetzleri (Wiedenmayer, 1977).	Souza DT, Silva FSPD, Silva LJD, Crevelin EJ, Moraes LAB, Zucchi TD, Melo IS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001912	2017	*
Phylogeny	Saccharopolyspora dendranthemae sp. nov. a halotolerant endophytic actinomycete isolated from a coastal salt marsh plant in Jiangsu, China.	Zhang YJ, Zhang WD, Qin S, Bian GK, Xing K, Li YF, Cao CL, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9917-1	2013	*
Phylogeny	Saccharopolyspora tripterygii sp. nov., an endophytic actinomycete isolated from the stem of Tripterygium hypoglaucum.	Li J, Zhao GZ, Qin S, Huang HY, Zhu WY, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.011734-0	2009	*

References

#16077

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45269

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29370

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25779 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82664

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398280.1 )

#25779

IJSEM 3040 2009 ( DOI 10.1099/ijs.0.011734-0 , PubMed 19643898 )

* These data were automatically processed and therefore are not curated

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