Strain identifier

BacDive ID: 13472

Type strain: Yes

Species: Saccharopolyspora tripterygii

Strain history: CCTCC AA 208062 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 65359.

NCBI tax ID(s): 566024 (species)

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General

@ref: 16077

BacDive-ID: 13472

DSM-Number: 45269

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Saccharopolyspora tripterygii DSM 45269 is an aerobe, spore-forming, mesophilic bacterium that was isolated from plant.

NCBI tax id

  • NCBI tax id: 566024
  • Matching level: species

strain history

@refhistory
16077<- S.-K. Tang, YIM; YIM 65359 <- J. Li
67770CCTCC AA 208062 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 65359.

doi: 10.13145/bacdive13472.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharopolyspora
  • species: Saccharopolyspora tripterygii
  • full scientific name: Saccharopolyspora tripterygii Li et al. 2009

@ref: 16077

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharopolyspora

species: Saccharopolyspora tripterygii

full scientific name: Saccharopolyspora tripterygii Li et al. 2009

type strain: yes

Morphology

cell morphology

  • @ref: 29370
  • gram stain: positive
  • cell length: 1.25 µm
  • cell width: 0.65 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29370
  • production: no

multimedia

  • @ref: 16077
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45269.jpg
  • caption: Medium 554 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16077GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16077N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16077positivegrowth28mesophilic
29370positivegrowth10-37
67770positivegrowth28mesophilic

culture pH

  • @ref: 29370
  • ability: positive
  • type: growth
  • pH: 07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 29370
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29370
  • spore formation: yes

halophily

  • @ref: 29370
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-12 %

observation

@refobservation
29370aggregates in chains
67770quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2937030089acetate+carbon source
2937022599arabinose+carbon source
2937029016arginine+carbon source
2937016947citrate+carbon source
2937028757fructose+carbon source
2937028260galactose+carbon source
2937017234glucose+carbon source
2937017716lactose+carbon source
2937017306maltose+carbon source
2937029864mannitol+carbon source
2937016634raffinose+carbon source
2937053258sodium citrate+carbon source
2937053424tween 20+carbon source
2937053423tween 40+carbon source
2937016199urea+carbon source
2937018222xylose+carbon source
293704853esculin+hydrolysis

enzymes

@refvalueactivityec
29370catalase+1.11.1.6
29370urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
16077plantYunnanChinaCHNAsia
67770Surface-sterilized stem of Tripterygium hypoglaucum from Yunnan ProvinceChinaCHNAsiaTripterygium hypoglaucum

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

taxonmaps

  • @ref: 69479
  • File name: preview.99_47007.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1393;97_7142;98_8820;99_47007&stattab=map
  • Last taxonomy: Saccharopolyspora
  • 16S sequence: FJ214364
  • Sequence Identity:
  • Total samples: 319
  • soil counts: 97
  • aquatic counts: 16
  • animal counts: 186
  • plant counts: 20

Safety information

risk assessment

  • @ref: 16077
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16077
  • description: Saccharopolyspora tripterygii strain YIM 65359 16S ribosomal RNA gene, partial sequence
  • accession: FJ214364
  • length: 1418
  • database: ena
  • NCBI tax ID: 566024

GC content

@refGC-contentmethod
1607770.5high performance liquid chromatography (HPLC)
2937070.5

External links

@ref: 16077

culture collection no.: DSM 45269, CCTCC AA 208062, YIM 65359, JCM 32123

straininfo link

  • @ref: 82664
  • straininfo: 398280

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19643898Saccharopolyspora tripterygii sp. nov., an endophytic actinomycete isolated from the stem of Tripterygium hypoglaucum.Li J, Zhao GZ, Qin S, Huang HY, Zhu WY, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.011734-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/genetics/*isolation & purification, Tripterygium/*microbiologyGenetics
Phylogeny23559043Saccharopolyspora dendranthemae sp. nov. a halotolerant endophytic actinomycete isolated from a coastal salt marsh plant in Jiangsu, China.Zhang YJ, Zhang WD, Qin S, Bian GK, Xing K, Li YF, Cao CL, Jiang JHAntonie Van Leeuwenhoek10.1007/s10482-013-9917-12013Bacterial Typing Techniques, Base Composition, Base Sequence, China, Chrysanthemum/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/metabolism, Endophytes/classification/genetics/*isolation & purification/*physiology, Energy Metabolism, Fatty Acids, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/classification/genetics/*isolation & purification/*physiology, *Salt Tolerance, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analysis, *WetlandsMetabolism
Phylogeny28632117Saccharopolyspora spongiae sp. nov., a novel actinomycete isolated from the marine sponge Scopalina ruetzleri (Wiedenmayer, 1977).Souza DT, Silva FSPD, Silva LJD, Crevelin EJ, Moraes LAB, Zucchi TD, Melo ISInt J Syst Evol Microbiol10.1099/ijsem.0.0019122017Animals, Bacterial Typing Techniques, Base Composition, Brazil, DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/genetics/isolation & purification, Sequence Analysis, DNATranscriptome
Phylogeny30789325Saccharopolyspora rhizosphaerae sp. nov., an actinomycete isolated from rhizosphere soil in Thailand.Intra B, Euanorasetr J, Take A, Inahashi Y, Mori M, Panbangred W, Matsumoto AInt J Syst Evol Microbiol10.1099/ijsem.0.0033072019Bacterial Typing Techniques, Base Composition, Colocasia/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Saccharopolyspora/*classification/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16077Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45269)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45269
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29370Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2577928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82664Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398280.1StrainInfo: A central database for resolving microbial strain identifiers