Halobacillus aidingensis (DSM 18198, CGMCC 1.3703, CIP 109013)

Name: Halobacillus aidingensis (DSM 18198, CGMCC 1.3703, CIP 109013)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1347

Type strain

Strain Designation AD-6

Culture col. no. DSM 18198 CGMCC 1.3703 CIP 109013 JCM 12771 AD-6

NCBI tax ID(s) 240303

Special Collections DSMZ JCM CIP Literature strains

Links

Halobacillus aidingensis AD-6 is a spore-forming, mesophilic, Gram-positive prokaryote that forms circular colonies and has a orange pigmentation.

spore-forming Gram-positive motile rod-shaped colony-forming pigmented mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 265603

CGMCC 1.3703,JCM 12771,DSM 18198,CIP 109013

@ref 20215

Last LPSN update 2025-12-16 09:47:05

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Halobacillus

Species Halobacillus aidingensis

Full scientific name Halobacillus aidingensis Liu et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
22987	positive	1.0-2.8 µm	0.6-1.2 µm	rod-shaped	peritrichous
116167	positive			rod-shaped
125439						90.7

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period
22987	1.0-2.0 mm	orange	circular	3 days
116167

Pigmentation

@ref	Production	Color
22987		orange

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7422	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40090	MEDIUM 665 -for Halobacillus aidigensis		Distilled water make up to (1000.000 ml);Sodium chloride (50.000 g);Potassium chloride (2.000 g);Magnesium sulphate heptahydrate (20.000 g);Agar (20.000 g);Yeastextract (10.000 g);Peptone (5.000 g);Tri-sodium citrate pentahydrate (3.000 g);Trypticase pept
116167	CIP Medium 413	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7422	positive	growth	30	mesophilic
22987	positive	growth	15.0-40.0
22987	positive	optimum	32.0	mesophilic
40090	positive	growth	37	mesophilic
67770	positive	growth	35	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
22987	positive	optimum	7.5
22987	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.3

Spore formation

@ref	Spore description	Type of spore	Confidence
22987	ellipsoidal,central or subterminal position	endospore
125438			95.895
125439			92.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
22987	NaCl	positive	growth	0.5-20.0 %(w/v)
22987	NaCl		optimum	10.0

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22987		casein	+	hydrolysis
22987	15824 ChEBI	D-fructose	+	builds acid from
22987	12936 ChEBI	D-galactose	-	builds acid from
22987	17634 ChEBI	D-glucose	+	builds acid from
22987	16899 ChEBI	D-mannitol	+	builds acid from
22987	16551 ChEBI	D-trehalose	+	builds acid from
22987	65327 ChEBI	D-xylose	-	builds acid from
22987	4853 ChEBI	esculin	-	hydrolysis
22987	5291 ChEBI	gelatin	+	hydrolysis
22987	17306 ChEBI	maltose	+	builds acid from
22987	17632 ChEBI	nitrate	-	reduction
116167	17632 ChEBI	nitrate	-	reduction
116167	16301 ChEBI	nitrite	-	reduction
22987	28017 ChEBI	starch	+	hydrolysis
22987	17992 ChEBI	sucrose	+	builds acid from
22987	53426 ChEBI	tween 80	-	hydrolysis
22987	18186 ChEBI	tyrosine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
22987	15688 ChEBI	acetoin
116167	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
22987	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116167	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
22987	arginine dihydrolase	-	3.5.3.6
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
22987	catalase	+	1.11.1.6
116167	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
22987	cytochrome oxidase	+	1.9.3.1
22987	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
22987	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116167	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
116167	ornithine decarboxylase	-	4.1.1.17
116167	oxidase	+
22987	phenylalanine deaminase	-	4.3.1.5
22987	phosphatase	-
68382	trypsin	-	3.4.21.4	from API zym
22987	urease	-	3.5.1.5
116167	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116167	-	+	+	+	-	+	-	-	-	-	+	-	+	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7422	aiding salt lake	Xinjiang region	China	CHN	Asia
67770	Aiding salt lake in Xinjiang region		China	CHN	Asia
116167	Environment, Salt lake	Aiding, Xinjiang	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7422	1	Risk group (German classification) According to TRBA 466
116167	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2675903131 annotated assembly for Halobacillus aidingensis CGMCC 1.3703	scaffold	GCA_900104185	240303.4	2675903131	240303	64.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7422	Halobacillus aidingensis strain AD-6 16S ribosomal RNA gene, partial sequence	AY351389	1492		240303

GC content

@ref	GC-content (mol%)	Method
7422	42.2
67770	42.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halobacillus aidingensis CGMCC 1.3703
NCBI: GCA_900104185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.90	no
125439	motility	BacteriaNetⓘ	yes	90.70	no
125439	gram_stain	BacteriaNetⓘ	variable	87.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halobacillus aidingensis strain CGMCC 1.3703
PATRIC: 240303.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.22	yes
125438	anaerobic	anaerobicⓘ	no	97.34	no
125438	spore-forming	spore-formingⓘ	yes	95.90	no
125438	aerobic	aerobicⓘ	yes	81.23	no
125438	thermophilic	thermophileⓘ	no	95.39	yes
125438	flagellated	motile2+ⓘ	yes	84.48	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Xylanolytic metabolism is regulated by coordination of transcription factors XynR and XylR in extremely thermophilic Caldicellulosiruptorales.	Manesh MJH, Crosby JR, Laemthong T, Bing RG, Chen SH, Vailionis J, Tanwee TNN, Zhang Y, Rodionov DA, Adams MWW, Kelly RM.	Appl Environ Microbiol	10.1128/aem.00516-25	2025
Metabolism	Screening a novel Na+/H+ antiporter gene from a metagenomic library of halophiles colonizing in the Dagong Ancient Brine Well in China.	Xiang W, Zhang J, Li L, Liang H, Luo H, Zhao J, Yang Z, Sun Q	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.01929.x	2010
Metabolism	Cloning and characterization of a Na+/H+ antiporter gene of the moderately halophilic bacterium Halobacillus aidingensis AD-6T.	Zou YJ, Yang LF, Wang L, Yang SS	J Microbiol	10.1007/s12275-008-0009-2	2008
Phylogeny	Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China.	Liu WY, Zeng J, Wang L, Dou YT, Yang SS	Int J Syst Evol Microbiol	10.1099/ijs.0.63787-0	2005

References

#7422	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18198
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22987	W. Y. Liu,J. Zeng,L. Wang,Y. T. Dou,S. S. Yang: Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China. IJSEM 55: 1991 - 1996 2005 ( DOI 10.1099/ijs.0.63787-0 , PubMed 16166700 )
#40090	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#116167	Collection of Institut Pasteur ; Curators of the CIP; CIP 109013
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halobacillus aidingensis (DSM 18198, CGMCC 1.3703, CIP 109013)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900104185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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