Name: Halobacillus yeomjeoni MSS-402
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1346

Type strain:

Species: Halobacillus yeomjeoni

Strain Designation: MSS-402

Culture col. no.: DSM 17110, KCTC 3957, JCM 12929

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 311194 (species)

SI-ID 281445

DSM 17110, KCTC 3957, JCM 12929

Section

Halobacillus yeomjeoni MSS-402 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from marine solar saltern.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Halobacillus*
	Species	**Halobacillus yeomjeoni**
	Full Scientific Name (LPSN)	Halobacillus yeomjeoni Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #22986]	Gram stain	positive
[Ref.: #67771]	Gram stain	variable
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #22986]	Cell length	2.0-100.0 µm

[Ref.: #22986]	Cell width	0.4-0.6 µm

[Ref.: #22986]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	filament-shaped

[Ref.: #22986]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.228

[Ref.: #22986]	Colony size	1.0-2.0 mm
[Ref.: #22986]	Colony color	light yellow
[Ref.: #22986]	Colony shape	circular
[Ref.: #22986]	Incubation period	2 days
[Ref.: #22986]	Cultivation medium used	MA supplemented with 3 % (w/v) NaCl

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6764]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #6764]

Culture medium composition

expand / minimize

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Culture medium

MA supplemented with 3 % (w/v) NaCl

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #6764]		growth	30 °C
[Ref.: #22986]		growth	15.0 °C
[Ref.: #22986]		growth	48.0 °C
[Ref.: #22986]	no	growth	10.0 °C
[Ref.: #22986]	no	growth	49.0 °C
[Ref.: #22986]		optimum	37.0 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #67771]		growth	30 °C

[Ref.: #6764]	Temperature range	mesophilic
[Ref.: #22986]	Temperature range	psychrophilic
[Ref.: #22986]	Temperature range	thermophilic
[Ref.: #22986]	Temperature range	psychrophilic
[Ref.: #22986]	Temperature range	thermophilic
[Ref.: #22986]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #22986]		optimum	7.0-8.0
[Ref.: #22986]		growth	6.0
[Ref.: #22986]	no	growth	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #22986]	Spore description	ellipsoidal,central or subterminal,in swollen sporangia
[Ref.: #22986]	Type of spore	endospore
[Ref.: #22986]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #22986]	NaCl		optimum	3.0-5.0	%(w/v)
[Ref.: #22986]	NaCl		growth	0.5	%(w/v)
[Ref.: #22986]	NaCl		growth	21.0	%(w/v)
[Ref.: #22986]	NaCl	no	growth	>22.0	%(w/v)

[Ref.: #22986]	Murein short key	A21.04
[Ref.: #22986]	Murein types	A4ß L-Orn-D-Asp

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22986]	casein	+	hydrolysis
[Ref.: #22986]	cellobiose ChEBI	+	builds acid from
[Ref.: #22986]	D-fructose ChEBI	-	builds acid from
[Ref.: #22986]	D-galactose ChEBI	-	builds acid from
[Ref.: #22986]	D-glucose ChEBI	+	builds acid from
[Ref.: #22986]	D-mannitol ChEBI	+	builds acid from
[Ref.: #22986]	D-mannose ChEBI	+	builds acid from
[Ref.: #22986]	D-ribose ChEBI	+	builds acid from
[Ref.: #22986]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #22986]	D-trehalose ChEBI	+	builds acid from
[Ref.: #22986]	D-xylose ChEBI	-	builds acid from
[Ref.: #22986]	esculin ChEBI	-	hydrolysis
[Ref.: #22986]	gelatin ChEBI	+	hydrolysis
[Ref.: #22986]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #22986]	L-arabinose ChEBI	-	builds acid from
[Ref.: #22986]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #22986]	lactose ChEBI	-	builds acid from
[Ref.: #22986]	maltose ChEBI	+	builds acid from
[Ref.: #22986]	melezitose ChEBI	-	builds acid from
[Ref.: #22986]	melibiose ChEBI	-	builds acid from
[Ref.: #22986]	myo-inositol ChEBI	-	builds acid from
[Ref.: #22986]	nitrate ChEBI	-	reduction
[Ref.: #22986]	raffinose ChEBI	-	builds acid from
[Ref.: #22986]	starch ChEBI	-	hydrolysis
[Ref.: #22986]	sucrose ChEBI	+	builds acid from
[Ref.: #22986]	tween 20 ChEBI	+	hydrolysis
[Ref.: #22986]	tween 40 ChEBI	+	hydrolysis
[Ref.: #22986]	tween 60 ChEBI	+	hydrolysis
[Ref.: #22986]	tween 80 ChEBI	+	hydrolysis
[Ref.: #22986]	tyrosine ChEBI	-	hydrolysis
[Ref.: #22986]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #22986]	acetoin ChEBI	no
[Ref.: #22986]	hydrogen sulfide ChEBI	no
[Ref.: #22986]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #22986]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #22986]	acid phosphatase	-	3.1.3.2
[Ref.: #22986]	alkaline phosphatase	+	3.1.3.1
[Ref.: #22986]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #22986]	alpha-fucosidase	-	3.2.1.51
[Ref.: #22986]	alpha-galactosidase	-	3.2.1.22
[Ref.: #22986]	alpha-glucosidase	-	3.2.1.20
[Ref.: #22986]	alpha-mannosidase	-	3.2.1.24
[Ref.: #22986]	arginine dihydrolase	-	3.5.3.6
[Ref.: #22986]	beta-galactosidase	+	3.2.1.23
[Ref.: #22986]	beta-glucosidase	-	3.2.1.21
[Ref.: #22986]	beta-glucuronidase	-	3.2.1.31
[Ref.: #22986]	cystine arylamidase	-	3.4.11.3
[Ref.: #22986]	esterase (C 4)	+
[Ref.: #22986]	esterase lipase (C 8)	+
[Ref.: #22986]	leucine arylamidase	-	3.4.11.1
[Ref.: #22986]	lipase (C 14)	-
[Ref.: #22986]	lysine decarboxylase	-	4.1.1.18
[Ref.: #22986]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #22986]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #22986]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #22986]	trypsin	-	3.4.21.4
[Ref.: #22986]	tryptophan deaminase	-	4.1.99.1
[Ref.: #22986]	urease	-	3.5.1.5
[Ref.: #22986]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22986]	Sample type/isolated from	marine solar saltern
[Ref.: #22986]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #22986]	Country	Republic of Korea
[Ref.: #22986]	Country ISO 3 Code	KOR
[Ref.: #22986]	Continent	Asia
[Ref.: #22986]	Enrichment culture	marine agar 2216 (MA;Difco) supplemented with 8 % (w/v) NaCl

[Ref.: #6764]	Sample type/isolated from	marine solar saltern
[Ref.: #6764]	Geographic location (country and/or sea, region)	Tae-an
[Ref.: #6764]	Country	Republic of Korea
[Ref.: #6764]	Country ISO 3 Code	KOR
[Ref.: #6764]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Marine solar saltern of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From marine solar saltern of the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY881246 (>99% sequence identity) for Halobacillus from Microbeatlas

Aquatic Samples	2677
Soil Samples	2306
Animal Samples	590
Plant Samples	407
Total Samples	5980

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6764]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6764]	Halobacillus yeomjeoni 16S ribosomal RNA gene, partial sequence	AY881246	1522	ENA	311194 tax ID
[Ref.: #20218]	Halobacillus yeomjeoni genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: A459	AB367159	459	ENA	311194 tax ID	*
[Ref.: #20218]	Halobacillus yeomjeoni genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: A697	AB367160	697	ENA	311194 tax ID	*
[Ref.: #20218]	Halobacillus yeomjeoni genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: B459	AB367161	459	ENA	311194 tax ID	*
[Ref.: #20218]	Halobacillus yeomjeoni genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: B697	AB367162	697	ENA	311194 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halobacillus sp. KCTC 3957	GCA_015905325	scaffold	GenBank	2755037 tax ID	*
[Ref.: #66792]	Halobacillus sp. KCTC 3957	2755037.3	wgs	PATRIC	2755037 tax ID	*

[Ref.: #6764]	GC-content	42.9 mol%
[Ref.: #22986]	GC-content	42.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halobacillus sp. KCTC 3957 KCTC 3957 NCBI: GCA_015905325.1
[Ref.: #69481]	spore-forming	yes	89	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halobacillus sp. KCTC 3957 KCTC 3957 NCBI: GCA_015905325.1
[Ref.: #69480]	flagellated	yes	87.388	no
[Ref.: #69480]	gram-positive	yes	88.181	no
[Ref.: #69480]	anaerobic	no	98.533	yes
[Ref.: #69480]	aerobic	yes	97.303	yes
[Ref.: #69480]	halophile	yes	93.027	no
[Ref.: #69480]	spore-forming	yes	95.218	yes
[Ref.: #69480]	glucose-util	yes	90.315	no
[Ref.: #69480]	thermophile	no	96.148	no
[Ref.: #69480]	motile	yes	93.076	yes
[Ref.: #69480]	glucose-ferment	no	86.564	no

Availability in culture collections External links

[Ref.: #6764]

Culture collection no.

DSM 17110, KCTC 3957, JCM 12929

[Ref.: #70996]

SI-ID 281445

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobacillus fulvus sp. nov., a moderately halophilic bacterium isolated from shrimp paste (Ka-pi) in Thailand.	Booncharoen A, Visessanguan W, Kuncharoen N, Yiamsombut S, Santiyanont P, Mhuantong W, Rojsitthisak P, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005054	2021	*
Phylogeny	Halobacillus andaensis sp. nov., a moderately halophilic bacterium isolated from saline and alkaline soil.	Wang K, Zhang L, Yang Y, Pan Y, Meng L, Liu H, Hong S, Huang H, Jiang J	Int J Syst Evol Microbiol	10.1099/ijs.0.000198	2015	*
Phylogeny	Thalassobacillus cyri sp. nov., a moderately halophilic Gram-positive bacterium from a hypersaline lake.	Sanchez-Porro C, Amoozegar MA, Rohban R, Hajighasemi M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.010488-0	2009	*
Phylogeny	Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea.	Yoon JH, Kang SJ, Lee CH, Oh HW, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63801-0	2005	*

References

#6764

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17110

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22986

Jung-Hoon Yoon,So-Jung Kang,Choong-Hwan Lee,Hyun Woo Oh,Tae-Kwang Oh: Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea. IJSEM 55: 2413 - 2417 2005 ( DOI 10.1099/ijs.0.63801-0 , PubMed 16280505 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70996

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID281445.1 )

* These data were automatically processed and therefore are not curated

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Halobacillus sp. KCTC 3957 KCTC 3957

Halobacillus sp. KCTC 3957 KCTC 3957

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