Name: Saccharopolyspora halophila DSM 45007
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13460

Type strain:

Species: Saccharopolyspora halophila

Culture col. no.: DSM 45007, KCTC 19162, YIM 90500, JCM 16221

Strain history: <- S-K Tang, Yunnan Inst. Microbiol, China

NCBI tax ID(s): 405551 (species)

SI-ID 297483

DSM 45007, KCTC 19162, JCM 16221

Special Collections

Other strains from Saccharopolyspora halophila

Section

Saccharopolyspora halophila DSM 45007 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from salt lake.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora halophila**
	Full Scientific Name (LPSN)	Saccharopolyspora halophila Tang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32568]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32568]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12238]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #12238]

Culture medium growth

[Ref.: #12238]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12238]

Culture medium composition

expand / minimize

[Ref.: #12238]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #12238]

Culture medium growth

[Ref.: #12238]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12238]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12238]	growth	37 °C
[Ref.: #20156]	optimum	28 °C
[Ref.: #32568]	growth	28-37 °C
[Ref.: #32568]	optimum	32.5 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #32568]			optimum	7.5
[Ref.: #32568]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32568]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32568]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32568]		NaCl		growth	10-15	%
[Ref.: #32568]		NaCl		optimum	12.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32568]	alanine ChEBI	+	carbon source
[Ref.: #32568]	arabinose ChEBI	+	carbon source
[Ref.: #32568]	asparagine ChEBI	+	carbon source
[Ref.: #32568]	cellobiose ChEBI	+	carbon source
[Ref.: #32568]	fructose ChEBI	+	carbon source
[Ref.: #32568]	galactose ChEBI	+	carbon source
[Ref.: #32568]	glucose ChEBI	+	carbon source
[Ref.: #32568]	glycine ChEBI	+	carbon source
[Ref.: #32568]	histidine ChEBI	+	carbon source
[Ref.: #32568]	lactose ChEBI	+	carbon source
[Ref.: #32568]	maltose ChEBI	+	carbon source
[Ref.: #32568]	mannitol ChEBI	+	carbon source
[Ref.: #32568]	mannose ChEBI	+	carbon source
[Ref.: #32568]	myo-inositol ChEBI	+	carbon source
[Ref.: #32568]	nitrate ChEBI	+	reduction
[Ref.: #32568]	raffinose ChEBI	+	carbon source
[Ref.: #32568]	rhamnose ChEBI	+	carbon source
[Ref.: #32568]	sucrose ChEBI	+	carbon source
[Ref.: #32568]	threonine ChEBI	+	carbon source
[Ref.: #32568]	urea ChEBI	+	carbon source
[Ref.: #32568]	xylitol ChEBI	+	carbon source
[Ref.: #32568]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #32568]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20156]	937	not determinedn.d.	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12238]	Sample type/isolated from	salt lake
[Ref.: #12238]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #12238]	Country	China
[Ref.: #12238]	Country ISO 3 Code	CHN
[Ref.: #12238]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Saline lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From saline-alkali soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12238]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12238]	Saccharopolyspora halophila strain YIM 90500 16S ribosomal RNA gene, partial sequence	DQ923129	1509	GenBank ENA	405551 tax ID

[Ref.: #12238]	GC-content	66.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32568]	GC-content	66.3 mol%

Availability in culture collections External links

[Ref.: #12238]

Culture collection no.

DSM 45007, KCTC 19162, YIM 90500, JCM 16221

[Ref.: #82652]

SI-ID 297483

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora qinghaiensis sp. nov., a novel actinobacterium isolated from a salt lake.	Jiang Y, Lai H, Meng C, Zheng Z, Guo Q, Xue Q, Wei X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01237-z	2019	*
Phylogeny	Saccharopolyspora deserti sp. nov., a novel halotolerant actinobacterium isolated from a desert.	Yang ZW, Salam N, Asem MD, Fang BZ, Lan L, Xiao M, Wadaan MAM, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002598	2018	*
Phylogeny	Saccharopolyspora griseoalba sp. nov., a novel actinomycete isolated from the Dead Sea.	Jiang Y, Wei X, Chen X, Jiang Y, Xue Q, Lai H, Jiang C	Antonie Van Leeuwenhoek	10.1007/s10482-016-0763-9	2016	*
Phylogeny	Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China.	Tang SK, Wang Y, Cai M, Zhi XY, Lou K, Xu LH, Jiang CL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65705-0	2009	*

References

#12238

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45007

#20156

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32568

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28783 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#82652

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297483.1 )

#28783

IJSEM 555 2009 ( DOI 10.1099/ijs.0.65705-0 , PubMed 19244440 )

* These data were automatically processed and therefore are not curated

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