Saccharopolyspora halophila (DSM 45007, KCTC 19162, YIM 90500)

Name: Saccharopolyspora halophila (DSM 45007, KCTC 19162, YIM 90500)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13460

Type strain

Culture col. no. DSM 45007 KCTC 19162 YIM 90500 JCM 16221

NCBI tax ID(s) 405551

Special Collections DSMZ JCM KCTC Wink compendium Literature strains

History <- S.-K. Tang; YIM 90500 KCTC 19162 <-- S.-K. Tang YIM 90500. <- S-K Tang, Yunnan Inst. Microbiol, China

Links

Saccharopolyspora halophila DSM 45007 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from salt lake.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297483

DSM 45007,KCTC 19162,JCM 16221

@ref 20215

Last LPSN update 2026-02-09 11:21:09

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora halophila

Full scientific name Saccharopolyspora halophila Tang et al. 2009

BacDive ID	Other strains from **Saccharopolyspora halophila** (1)	Type strain
160616	S. halophila H212, DSM 46681

Morphology

Cell morphology

@ref	Gram stain	Motility
32568	positive
67771	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12238	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252; with strain-specific modifications) Composition: NaCl 150.0 g/l Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
12238	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12238	positive	growth	37
20156	positive	optimum	28
32568	positive	growth	28-37
32568	positive	optimum	32.5
67770	positive	growth	37
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH
32568	positive	optimum	7.5
32568	positive	growth	07-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32568	aerobe
67771	aerobe

Spore formation

32568

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32568	NaCl	positive	growth	10-15 %
32568	NaCl	positive	optimum	12.5 %

Observation

67770

Observationquinones: MK-9(H₂), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32568	16449 ChEBI	alanine	+	carbon source
32568	22599 ChEBI	arabinose	+	carbon source
32568	22653 ChEBI	asparagine	+	carbon source
32568	17057 ChEBI	cellobiose	+	carbon source
32568	28757 ChEBI	fructose	+	carbon source
32568	28260 ChEBI	galactose	+	carbon source
32568	17234 ChEBI	glucose	+	carbon source
32568	15428 ChEBI	glycine	+	carbon source
32568	27570 ChEBI	histidine	+	carbon source
32568	17716 ChEBI	lactose	+	carbon source
32568	17306 ChEBI	maltose	+	carbon source
32568	29864 ChEBI	mannitol	+	carbon source
32568	37684 ChEBI	mannose	+	carbon source
32568	17268 ChEBI	myo-inositol	+	carbon source
32568	17632 ChEBI	nitrate	+	reduction
32568	16634 ChEBI	raffinose	+	carbon source
32568	26546 ChEBI	rhamnose	+	carbon source
32568	17992 ChEBI	sucrose	+	carbon source
32568	26986 ChEBI	threonine	+	carbon source
32568	16199 ChEBI	urea	+	carbon source
32568	17151 ChEBI	xylitol	+	carbon source
32568	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
32568	gelatinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20156	not determinedn.d.	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12238	salt lake	Xinjiang Province	China	CHN	Asia
67770	Saline lake	Xinjiang, north-west China	China	CHN	Asia
67771	From saline-alkali soil	Xinjiang Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12238	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953195v1 assembly for Saccharopolyspora halophila JCM 16221	contig	GCA_039531955	405551	70.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12238	Saccharopolyspora halophila strain YIM 90500 16S ribosomal RNA gene, partial sequence	DQ923129	1509		405551

GC content

@ref	GC-content (mol%)	Method
12238	66.3	high performance liquid chromatography (HPLC)
32568	66.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Novel marine actinobacteria from emerald Andaman & Nicobar Islands: a prospective source for industrial and pharmaceutical byproducts.	Meena B, Rajan LA, Vinithkumar NV, Kirubagaran R.	BMC Microbiol	10.1186/1471-2180-13-145	2013
	Cultivation-independent methods applied to the microbial prospection of oil and gas in soil from a sedimentary basin in Brazil.	Miqueletto PB, Andreote FD, Dias AC, Ferreira JC, Dos Santos Neto EV, de Oliveira VM.	AMB Express	10.1186/2191-0855-1-35	2011
Phylogeny	Saccharopolyspora qinghaiensis sp. nov., a novel actinobacterium isolated from a salt lake.	Jiang Y, Lai H, Meng C, Zheng Z, Guo Q, Xue Q, Wei X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01237-z	2019
Phylogeny	Saccharopolyspora deserti sp. nov., a novel halotolerant actinobacterium isolated from a desert.	Yang ZW, Salam N, Asem MD, Fang BZ, Lan L, Xiao M, Wadaan MAM, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002598	2018
Phylogeny	Saccharopolyspora griseoalba sp. nov., a novel actinomycete isolated from the Dead Sea.	Jiang Y, Wei X, Chen X, Jiang Y, Xue Q, Lai H, Jiang C	Antonie Van Leeuwenhoek	10.1007/s10482-016-0763-9	2016
Phylogeny	Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China.	Tang SK, Wang Y, Cai M, Zhi XY, Lou K, Xu LH, Jiang CL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65705-0	2009

References

#12238	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45007
#20156	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28783	IJSEM 555 2009 ( DOI 10.1099/ijs.0.65705-0 , PubMed 19244440 )
#32568	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28783
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora halophila (DSM 45007, KCTC 19162, YIM 90500)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039531955

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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