Name: Saccharopolyspora kobensis DSM 44795
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13459

Type strain:

Species: Saccharopolyspora kobensis

Culture col. no.: DSM 44795, ATCC 20501, FERM P-3912, IFO 15151, IMSNU 22158, JCM 9109, KCTC 9224, KCTC 9484, NBRC 15151, BCRC 16271, CGMCC 4.1319

Strain history: IFO 15151 <-- ATCC 20501 <-- Kowa Co., Ltd.; KC-6606 <-- T. Mori.

NCBI tax ID(s): 146035 (species)

SI-ID 37219

ATCC 20501, IFO 15151, JCM 9109, KCTC 9224, KCTC 9484, NBRC 15151, DSM 44795, BCRC 16271, CCRC 16271, CGMCC 4.1319

Other strains from Saccharopolyspora kobensis

S. kobensis W12, DSM 45556, CGMCC 4.3529, JCM ...

Section

Saccharopolyspora kobensis DSM 44795 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora kobensis**
	Full Scientific Name (LPSN)	Saccharopolyspora kobensis (Lacey 1989 ex Iwasake and Mori 1979) Nouioui et al. 2018

	Synonym	Saccharopolyspora jiangxiensis
	Synonym	Saccharopolyspora hirsuta subsp. kobensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11982]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #11982]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11982]

Culture medium composition

expand / minimize

[Ref.: #11982]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11982]

Culture medium growth

[Ref.: #11982]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11982]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11982]			growth	28 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #11982]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #11982]	Name of produced compound	KA-6606
[Ref.: #67770]	Name of produced compound	Sporaricins

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11982]	Sample type/isolated from	soil
[Ref.: #11982]	Country	Japan
[Ref.: #11982]	Country ISO 3 Code	JPN
[Ref.: #11982]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kobe, Hyogo Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU267029 (>99% sequence identity) for Saccharopolyspora from Microbeatlas

Aquatic Samples	3
Soil Samples	112
Animal Samples	15
Plant Samples	6
Total Samples	136

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11982]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Saccharopolyspora hirsuta subsp. kobensis strain JCM 9109 16S ribosomal RNA gene, partial sequence	EU267029	1395	ENA	146035 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharopolyspora kobensis ATCC 20501	GCA_900108315	scaffold	GenBank	146035 tax ID
[Ref.: #66792]	Saccharopolyspora hirsuta strain ATCC 20501	1837.3	wgs	PATRIC	1837 tax ID	*
[Ref.: #66792]	Saccharopolyspora hirsuta strain DSM 44795	1837.4	wgs	PATRIC	1837 tax ID	*
[Ref.: #66792]	Saccharopolyspora hirsuta ATCC 20501	2597490365	draft	JGI IMG/M	1837 tax ID	*
[Ref.: #66792]	Saccharopolyspora kobensis DSM 44795	2630968261	draft	JGI IMG/M	146035 tax ID	*

[Ref.: #67770]

GC-content

70.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharopolyspora kobensis ATCC 20501 NCBI: GCA_900108315.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharopolyspora hirsuta strain ATCC 20501 PATRIC: 1837.3
[Ref.: #69480]	motile	no	90.999	no
[Ref.: #69480]	gram-positive	yes	90.092	no
[Ref.: #69480]	anaerobic	no	98.951	no
[Ref.: #69480]	aerobic	yes	90.504	no
[Ref.: #69480]	halophile	yes	55.65	no
[Ref.: #69480]	spore-forming	yes	92.858	no
[Ref.: #69480]	glucose-util	yes	87.333	no
[Ref.: #69480]	flagellated	no	97.442	no
[Ref.: #69480]	glucose-ferment	no	91.592	no
[Ref.: #69480]	thermophile	no	96.954	yes

Availability in culture collections External links

[Ref.: #11982]

Culture collection no.

DSM 44795, ATCC 20501, FERM P-3912, IFO 15151, IMSNU 22158, JCM 9109, KCTC 9224, KCTC 9484, NBRC 15151, BCRC 16271, CGMCC 4.1319

[Ref.: #82651]

SI-ID 37219

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora soli sp. nov., isolated from Northern Cyprus soil.	Veyisoglu A, Tatar D, Saygin H, Cetin D, Guven K, Sahin N	Arch Microbiol	10.1007/s00203-022-02994-8	2022	*
Phylogeny	Saccharopolyspora maritima sp. nov., an actinomycete isolated from mangrove sediment.	Suksaard P, Srisuk N, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002941	2018	*
Phylogeny	Saccharopolyspora indica sp. nov., an actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis).	Vaddavalli R, Peddi S, Kothagauni SY, Begum Z, Gaddam B, Periketi M, Linga VR	Int J Syst Evol Microbiol	10.1099/ijs.0.057539-0	2014	*

References

#11982

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44795

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82651

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37219.1 )

* These data were automatically processed and therefore are not curated

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Saccharopolyspora kobensis ATCC 20501

Saccharopolyspora hirsuta strain ATCC 20501

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