Saccharopolyspora kobensis (DSM 44795, ATCC 20501, FERM P-3912)

Name: Saccharopolyspora kobensis (DSM 44795, ATCC 20501, FERM P-3912)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13459

Type strain

Strain Designation FERM-P 3912

Culture col. no. DSM 44795 ATCC 20501 FERM P-3912 IFO 15151 IMSNU 22158 7 more

NCBI tax ID(s) 146035

Special Collections DSMZ JCM KCTC

Links

Saccharopolyspora kobensis FERM-P 3912 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 37219

ATCC 20501,IFO 15151,JCM 9109,KCTC 9224,KCTC 9484,NBRC 15151,DSM 44795,BCRC 16271,CCRC 16271,CGMCC 4.1319

@ref 20215

Last LPSN update 2025-12-16 09:50:06

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora kobensis

Full scientific name Saccharopolyspora kobensis (Lacey 1989 ex Iwasake and Mori 1979) Nouioui et al. 2018

Synonyms (2)

Saccharopolyspora hirsuta subsp. kobensis
Saccharopolyspora jiangxiensis

BacDive ID	Other strains from **Saccharopolyspora kobensis** (1)	Type strain
13470	S. kobensis W12, DSM 45556, CGMCC 4.3529, JCM 14613

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	91.247
125439	positive	97.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11982	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
11982	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11982	positive	growth	28	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.037
125439	obligate aerobe	97.4

Compound production

@ref	Compound
11982	KA-6606
67770	Sporaricins

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11982	soil	Japan	JPN	Asia
67770	Soil	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU267029 (>99% sequence identity) for Saccharopolyspora from Microbeatlas

Aquatic Samples	3
Soil Samples	112
Animal Samples	15
Plant Samples	6
Total Samples	136

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11982	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Saccharopolyspora kobensis DSM 44795	complete	2630968261	146035	98.57
67770	IMG-taxon 2597490365 annotated assembly for Saccharopolyspora kobensis ATCC 20501	scaffold	2597490365	146035	71.88
66792	ASM305396v1 assembly for Saccharopolyspora hirsuta	contig		1837	4.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Saccharopolyspora hirsuta subsp. kobensis strain JCM 9109 16S ribosomal RNA gene, partial sequence	EU267029	1395		146035

GC content

@ref	GC-content (mol%)	Method
67770	70.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharopolyspora kobensis ATCC 20501
NCBI: GCA_900108315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	60.60	no
125439	motility	BacteriaNetⓘ	no	66.50	no
125439	gram_stain	BacteriaNetⓘ	positive	97.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharopolyspora hirsuta strain ATCC 20501
PATRIC: 1837.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.25	no
125438	anaerobic	anaerobicⓘ	no	96.47	no
125438	spore-forming	spore-formingⓘ	yes	89.91	no
125438	aerobic	aerobicⓘ	yes	91.04	no
125438	thermophilic	thermophileⓘ	no	95.25	yes
125438	flagellated	motile2+ⓘ	no	88.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
	Saccharopolyspora oryzae sp. nov., isolated from rhizosphere soil of the wild rice species Oryza rufipogon.	Kammanee S, Muangham S, Butdee W, Klaysubun C, Igarashi Y, Duangmal K.	J Antibiot (Tokyo)	10.1038/s41429-023-00647-6	2023
Phylogeny	Saccharopolyspora soli sp. nov., isolated from Northern Cyprus soil.	Veyisoglu A, Tatar D, Saygin H, Cetin D, Guven K, Sahin N	Arch Microbiol	10.1007/s00203-022-02994-8	2022
Phylogeny	Saccharopolyspora maritima sp. nov., an actinomycete isolated from mangrove sediment.	Suksaard P, Srisuk N, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002941	2018
Phylogeny	Saccharopolyspora indica sp. nov., an actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis).	Vaddavalli R, Peddi S, Kothagauni SY, Begum Z, Gaddam B, Periketi M, Linga VR	Int J Syst Evol Microbiol	10.1099/ijs.0.057539-0	2014

References

#11982	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44795
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora kobensis (DSM 44795, ATCC 20501, FERM P-3912)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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