Campylobacter sputorum CIP 105558 is a Gram-negative, motile, rod-shaped bacterium of the family Campylobacteraceae.
Gram-negative motile rod-shaped genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Campylobacteraceae |
| Genus Campylobacter |
| Species Campylobacter sputorum |
| Full scientific name Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 32758 | MEDIUM 262 - Columbia agar with 30 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml) | |||
| 32758 | Brucella broth | ||||
| 32758 | CIP Medium 262 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 32758 | NaCl | positive | growth | 3.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68373 | 30089 ChEBI | acetate | + | assimilation | from API CAM |
| 68373 | 16947 ChEBI | citrate | - | assimilation | from API CAM |
| 68373 | 606565 ChEBI | hippurate | - | hydrolysis | from API CAM |
| 32758 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68373 | 25115 ChEBI | malate | + | assimilation | from API CAM |
| 68373 | 17632 ChEBI | nitrate | + | reduction | from API CAM |
| 32758 | 17632 ChEBI | nitrate | + | reduction | |
| 32758 | 16301 ChEBI | nitrite | + | reduction | |
| 68373 | 17272 ChEBI | propionate | - | assimilation | from API CAM |
| 68373 | 30031 ChEBI | succinate | + | assimilation | from API CAM |
| 68373 | 78019 ChEBI | triphenyltetrazolium chloride | + | reduction | from API CAM |
| 68373 | 16199 ChEBI | urea | - | hydrolysis | from API CAM |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68373 | alkaline phosphatase | - | 3.1.3.1 | from API CAM |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 32758 | catalase | + | 1.11.1.6 | |
| 68373 | catalase | + | 1.11.1.6 | from API CAM |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68373 | esterase | - | from API CAM | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 32758 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 | from API CAM |
| 32758 | gelatinase | - | ||
| 68373 | L-aspartate arylamidase | + | 3.4.11.21 | from API CAM |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 32758 | oxidase | + | ||
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API CAM |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 32758 | urease | - | 3.5.1.5 | |
| 68373 | urease | - | 3.5.1.5 | from API CAM |
| 68382 | valine arylamidase | - | from API zym |
| @ref | URE | Reduction of nitrateNIT | EsteraseEST | HIP | GGT | TTC | PYRA | L-arginine arylamidaseArgA | L-aspartic acid arylamidaseAspA | PAL | H2S productionH2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | Erythromycin resistance (+) sensitivity (-)ERO | CAT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47194 | - | + | - | - | - | + | - | - | + | - | + | - | + | + | - | + | - | + | - | - | + | |
| 47194 | - | + | - | - | - | + | - | + | + | - | + | + | + | + | - | + | - | + | - | - | + |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 32758 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM222073v1 assembly for Campylobacter sputorum bv. faecalis CCUG 20703 | complete | 1031920 | 96.67 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 69.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.20 | no |
| 125439 | motility | BacteriaNetⓘ | no | 55.00 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.46 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 63.73 | no |
| 125438 | aerobic | aerobicⓘ | no | 90.74 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 94.92 | no |
| 125438 | thermophilic | thermophileⓘ | no | 89.06 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 64.22 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Investigating the Significance of Non-jejuni/coli Campylobacter Strains in Patients with Diarrhea. | Teksoy N, Ilktac M, Ilktac M, Ongen B. | Healthcare (Basel) | 10.3390/healthcare11182562 | 2023 | ||
| Enzymology | Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni. | van Alphen LB, Wenzel CQ, Richards MR, Fodor C, Ashmus RA, Stahl M, Karlyshev AV, Wren BW, Stintzi A, Miller WG, Lowary TL, Szymanski CM. | PLoS One | 10.1371/journal.pone.0087051 | 2014 | |
| Phylogeny | Multilocus sequence typing methods for the emerging Campylobacter Species C. hyointestinalis, C. lanienae, C. sputorum, C. concisus, and C. curvus. | Miller WG, Chapman MH, Yee E, On SL, McNulty DK, Lastovica AJ, Carroll AM, McNamara EB, Duffy G, Mandrell RE. | Front Cell Infect Microbiol | 10.3389/fcimb.2012.00045 | 2012 | |
| Phylogeny | Speciation of Campylobacter coli, C. jejuni, C. helveticus, C. lari, C. sputorum, and C. upsaliensis by matrix-assisted laser desorption ionization-time of flight mass spectrometry. | Mandrell RE, Harden LA, Bates A, Miller WG, Haddon WF, Fagerquist CK. | Appl Environ Microbiol | 10.1128/aem.71.10.6292-6307.2005 | 2005 | |
| Genetics | Comparative Genomics of All Three Campylobacter sputorum Biovars and a Novel Cattle-Associated C. sputorum Clade. | Miller WG, Yee E, Chapman MH, Bono JL. | Genome Biol Evol | 10.1093/gbe/evx112 | 2017 | |
| Enzymology | Direct quantification of Campylobacter jejuni and Campylobacter lanienae in feces of cattle by real-time quantitative PCR. | Inglis GD, Kalischuk LD. | Appl Environ Microbiol | 10.1128/aem.70.4.2296-2306.2004 | 2004 | |
| Phylogeny | Campylobacter sputorum subsp. bovis subsp. nov., isolated from cattle, and an emended description of Campylobacter sputorum. | Miller WG, Williams TG, Wood DF, Chapman MH. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006571 | 2024 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #32758 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105558 |
| #47194 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20703 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68373 | Automatically annotated from API CAM . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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