Campylobacter sputorum CIP 105555 is a Gram-negative, motile, rod-shaped bacterium of the family Campylobacteraceae.
Gram-negative motile rod-shaped genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Campylobacteraceae |
| Genus Campylobacter |
| Species Campylobacter sputorum |
| Full scientific name Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 35842 | MEDIUM 262 - Columbia agar with 30 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml) | |||
| 35842 | Brucella broth | ||||
| 35842 | CIP Medium 262 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 35842 | NaCl | positive | growth | 3.5 % |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 35842 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 35842 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 35842 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 35842 | gelatinase | - | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 35842 | oxidase | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 35842 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||
| @ref | 50130 | ||||||||||||||||||||||||||||||||||||||||||
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| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||
| @ref | 50130 | |||||||||||||||||||||||||||||||||||||||
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| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 35842 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM222075v1 assembly for Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 | complete | 1032066 | 97.61 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 89.69 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.34 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 41.30 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.18 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.96 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 65.10 | no |
| 125438 | aerobic | aerobicⓘ | no | 89.80 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 94.87 | no |
| 125438 | thermophilic | thermophileⓘ | no | 87.81 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 64.45 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings. | Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF. | Saudi J Biol Sci | 10.1016/j.sjbs.2023.103869 | 2023 | |
| Enzymology | Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni. | van Alphen LB, Wenzel CQ, Richards MR, Fodor C, Ashmus RA, Stahl M, Karlyshev AV, Wren BW, Stintzi A, Miller WG, Lowary TL, Szymanski CM. | PLoS One | 10.1371/journal.pone.0087051 | 2014 | |
| Phylogeny | Multilocus sequence typing methods for the emerging Campylobacter Species C. hyointestinalis, C. lanienae, C. sputorum, C. concisus, and C. curvus. | Miller WG, Chapman MH, Yee E, On SL, McNulty DK, Lastovica AJ, Carroll AM, McNamara EB, Duffy G, Mandrell RE. | Front Cell Infect Microbiol | 10.3389/fcimb.2012.00045 | 2012 | |
| Phylogeny | Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum biovar paraureolyticus, a urease-producing variant from cattle and humans. | On SL, Atabay HI, Corry JE, Harrington CS, Vandamme P | Int J Syst Bacteriol | 10.1099/00207713-48-1-195 | 1998 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #35842 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105555 |
| #50130 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30522 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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