Strain identifier

BacDive ID: 134440

Type strain: No

Species: Campylobacter sputorum

Strain history: CIP <- 1998, CCUG <- 1987, F.J. Bolton, PHL, Preston, UK: strain Bolton A3, Campylobacter fecalis

NCBI tax ID(s): 206 (species)

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General

@ref: 32758

BacDive-ID: 134440

keywords: genome sequence, Bacteria, mesophilic, motile

description: Campylobacter sputorum CIP 105558 is a mesophilic, motile bacterium of the family Campylobacteraceae.

NCBI tax id

  • NCBI tax id: 206
  • Matching level: species

strain history

  • @ref: 32758
  • history: CIP <- 1998, CCUG <- 1987, F.J. Bolton, PHL, Preston, UK: strain Bolton A3, Campylobacter fecalis

doi: 10.13145/bacdive134440.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter sputorum
  • full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio sputorum

@ref: 32758

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter sputorum

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes91.62
6948099.998negative
32758yesnegativerod-shaped

colony morphology

  • @ref: 32758

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32758MEDIUM 262 - Columbia agar with 30 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml)
32758Brucella brothyes
32758CIP Medium 262yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=262

culture temp

@refgrowthtypetemperaturerange
32758positivegrowth37mesophilic
32758positivegrowth25-41
32758nogrowth5psychrophilic
32758nogrowth10psychrophilic
32758nogrowth45thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no99
69480no99.998

halophily

  • @ref: 32758
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32758606565hippurate-hydrolysis
3275817632nitrate+reduction
3275816301nitrite+reduction
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837330031succinate+assimilation
6837330089acetate+assimilation
6837317272propionate-assimilation
6837325115malate+assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg
327580129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideyes
3275835581indoleno

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase-
68373urease-3.5.1.5
32758oxidase+
32758gelatinase-
32758catalase+1.11.1.6
32758gamma-glutamyltransferase-2.3.2.2
32758urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
32758-+++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47194-+---+--+-+-++-+-+--+
47194-+---+-++-++++-+-+--+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
32758PrestonUnited KingdomGBREurope
47194PrestonUnited KingdomGBREuropeBovine feces
32758PrestonUnited KingdomGBREuropeAnimal, Bovine feces

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 32758
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter sputorum bv. faecalis CCUG 20703GCA_002220735completencbi1031920
66792Campylobacter sputorum bv. faecalis CCUG 207031031920.3completepatric1031920

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
flagellatedyes57.891no
gram-positiveno98.838no
anaerobicyes56.224no
aerobicno98.351no
halophileno84.346no
spore-formingno95.498no
thermophileno85.844no
glucose-utilno89.035no
motileyes90.39no
glucose-fermentno85.346no

External links

@ref: 32758

culture collection no.: CIP 105558, CCUG 20703, LMG 8532

straininfo link

  • @ref: 91965
  • straininfo: 13604

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32758Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105558Collection of Institut Pasteur (CIP 105558)
47194Curators of the CCUGhttps://www.ccug.se/strain?id=20703Culture Collection University of Gothenburg (CCUG) (CCUG 20703)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91965Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13604.1