Name: Fulvivirga kasyanovii CCTCC AB 206119
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134217

Type strain:

Species: Fulvivirga kasyanovii

Culture col. no.: CCTCC AB 206119, KCTC 12832, KMM 6220, JCM 16186, NBRC 106557

Strain history: <- OI Nedashkovskaya, KMM, Russia

NCBI tax ID(s): 396812 (species)

SI-ID 293210

LMG 23929, KCTC 12832, LMG 23821, JCM 16186

Special Collections

Section

Fulvivirga kasyanovii CCTCC AB 206119 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Fulvivirgaceae*
	Genus	*Fulvivirga*
	Species	**Fulvivirga kasyanovii**
	Full Scientific Name (LPSN)	Fulvivirga kasyanovii Nedashkovskaya et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31913]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.732

[Ref.: #31913]	Cell length	2.3 µm

[Ref.: #31913]	Cell width	0.25 µm

[Ref.: #31913]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31913]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #31913]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #31913]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31913]	growth	14-44 °C
[Ref.: #31913]	optimum	36 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	35-37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31913]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31913]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31913]		NaCl		growth	0-10	%
[Ref.: #31913]		NaCl		optimum	2.5	%

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31913]	gelatin ChEBI	+	carbon source
[Ref.: #31913]	tween 40 ChEBI	+	carbon source
[Ref.: #31913]	tween 80 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31913]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31913]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31913]	catalase	+	1.11.1.6
[Ref.: #31913]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31913]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31913]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater from a mussel farm in a lagoon of Nha Trang Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater, mussel farm in a lagoon
[Ref.: #67771]	Geographic location (country and/or sea, region)	Nha Trang Bay, South China Sea
[Ref.: #67771]	Country	Vietnam
[Ref.: #67771]	Country ISO 3 Code	VNM
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ836305 (>99% sequence identity) for Fulvivirga kasyanovii subclade from Microbeatlas

Aquatic Samples	1962
Soil Samples	497
Animal Samples	124
Plant Samples	101
Total Samples	2684

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31913]	Fulvivirga kasyanovii strain KMM 6220 16S ribosomal RNA gene, partial sequence	DQ836305	1364	GenBank ENA	396812 tax ID
[Ref.: #124043]	Fulvivirga kasyanovii gene for 16S rRNA, partial sequence, strain: NBRC 106557.	AB682457	1445	GenBank ENA	396812 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fulvivirga kasyanovii JCM 16186	GCA_009711405	scaffold	GenBank ENA	396812 tax ID
[Ref.: #66792]	Fulvivirga kasyanovii strain JCM 16186	396812.3	wgs	PATRIC	396812 tax ID	*

[Ref.: #31913]	GC-content	59.9 mol%
[Ref.: #67770]	GC-content	59.9 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fulvivirga kasyanovii JCM 16186 NCBI: GCA_009711405.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fulvivirga kasyanovii strain JCM 16186 PATRIC: 396812.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.732	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.207	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	81.571	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.537	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.551	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.25	no

Availability in culture collections External links

[Ref.: #31913]

Culture collection no.

CCTCC AB 206119, KCTC 12832, KMM 6220, JCM 16186, NBRC 106557

[Ref.: #91812]

SI-ID 293210

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fulvivirga kasyanovii gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from seawater in a mussel farm.	Nedashkovskaya OI, Kim SB, Shin DS, Beleneva IA, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.64641-0	2007	*
Phylogeny	Fulvivirga marina sp. nov. and Fulvivirga sediminis sp. nov., two novel Bacteroidetes isolated from the marine sediment.	Zhao LH, Wang ZJ, Song C, Xing X, Liu YY, Shi LF, Yu TT, Zhang YM, Zhu Q, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005308	2022	*
Phylogeny	Fulvivirga imtechensis sp. nov., a member of the phylum Bacteroidetes.	Nupur, Sharma S, Kumar Singh P, Suresh K, Anil Kumar P	Int J Syst Evol Microbiol	10.1099/ijs.0.036608-0	2011	*
Phylogeny	Fulvivirga sedimenti sp.nov, isolated from the sediment of oceanic tidal zone.	Liu XJ, Yu H, Du SJ, Du ZJ, Ye MQ	Arch Microbiol	10.1007/s00203-022-03344-4	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31913

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28170 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91812

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293210.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28170

IJSEM 1046 2007 ( DOI 10.1099/ijs.0.64641-0 , PubMed 17473256 )

* These data were automatically processed and therefore are not curated

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Fulvivirga kasyanovii JCM 16186

Fulvivirga kasyanovii strain JCM 16186

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