Name: Planifilum yunnanense LA5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134218

Type strain:

Species: Planifilum yunnanense

Strain Designation: LA5

Culture col. no.: CCTCC AA 206002, KCTC 13052

NCBI tax ID(s): 337094 (species)

Special Collections

Section

Planifilum yunnanense LA5 is an aerobe, spore-forming bacterium that was isolated from hot spring.

spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Thermoactinomycetaceae*
	Genus	*Planifilum*
	Species	**Planifilum yunnanense**
	Full Scientific Name (LPSN)	Planifilum yunnanense Zhang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31915]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31915]			growth	50-75 °C
[Ref.: #31915]			optimum	65 °C

	pH	Kind of pH		pH
[Ref.: #31915]			optimum	8.5
[Ref.: #31915]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31915]

Oxygen tolerance

aerobe

[Ref.: #31915]

Ability of spore formation

yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31915]	aspartate ChEBI	+	carbon source
[Ref.: #31915]	fructose ChEBI	+	carbon source
[Ref.: #31915]	galactose ChEBI	+	carbon source
[Ref.: #31915]	galacturonate ChEBI	+	carbon source
[Ref.: #31915]	glutamate ChEBI	+	carbon source
[Ref.: #31915]	inosine ChEBI	+	carbon source
[Ref.: #31915]	itaconate ChEBI	+	carbon source
[Ref.: #31915]	lactose ChEBI	+	carbon source
[Ref.: #31915]	leucine ChEBI	+	carbon source
[Ref.: #31915]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #31915]	myo-inositol ChEBI	+	carbon source
[Ref.: #31915]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31915]	ornithine ChEBI	+	carbon source
[Ref.: #31915]	proline ChEBI	+	carbon source
[Ref.: #31915]	raffinose ChEBI	+	carbon source
[Ref.: #31915]	sorbitol ChEBI	+	carbon source
[Ref.: #31915]	succinate ChEBI	+	carbon source
[Ref.: #31915]	sucrose ChEBI	+	carbon source
[Ref.: #31915]	threonine ChEBI	+	carbon source
[Ref.: #31915]	uridine ChEBI	+	carbon source
[Ref.: #31915]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31915]	Sample type/isolated from	hot spring
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ119659 (>99% sequence identity) for Planifilum from Microbeatlas

Aquatic Samples	744
Soil Samples	4724
Animal Samples	1352
Plant Samples	1548
Total Samples	8368

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31915]	Planifilum yunnanense strain LA5 16S ribosomal RNA gene, partial sequence	DQ119659	1525	GenBank ENA	337094 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planifilum yunnanense KCTC 13052	2784132149	draft	JGI IMG/M	337094 tax ID	*

[Ref.: #31915]

GC-content

56.8 mol%

Availability in culture collections External links

[Ref.: #31915]

Culture collection no.

CCTCC AA 206002, KCTC 13052

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planifilum yunnanense sp. nov., a thermophilic thermoactinomycete isolated from a hot spring.	Zhang YX, Dong C, Biao S	Int J Syst Evol Microbiol	10.1099/ijs.0.64646-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31915

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28172 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28172

IJSEM 1851 2007 ( DOI 10.1099/ijs.0.64646-0 , PubMed 17684270 )

* These data were automatically processed and therefore are not curated

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