Strain identifier
BacDive ID: 134218
Type strain: 
Species: Planifilum yunnanense
Strain Designation: LA5
NCBI tax ID(s): 337094 (species)
version 9 (current version)
General
@ref: 31915
BacDive-ID: 134218
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming
description: Planifilum yunnanense LA5 is an aerobe, spore-forming bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 337094
- Matching level: species
doi: 10.13145/bacdive134218.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Planifilum
- species: Planifilum yunnanense
- full scientific name: Planifilum yunnanense Zhang et al. 2007
@ref: 31915
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Thermoactinomycetaceae
genus: Planifilum
species: Planifilum yunnanense
strain designation: LA5
type strain: yes
Morphology
pigmentation
- @ref: 31915
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 31915 | positive | growth | 50-75 |
| 31915 | positive | optimum | 65 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31915 | positive | growth | 6.0-10.0 | alkaliphile |
| 31915 | positive | optimum | 8.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31915
- oxygen tolerance: aerobe
spore formation
- @ref: 31915
- spore formation: yes
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31915 | 35391 | aspartate | + | carbon source |
| 31915 | 28757 | fructose | + | carbon source |
| 31915 | 28260 | galactose | + | carbon source |
| 31915 | 24175 | galacturonate | + | carbon source |
| 31915 | 29987 | glutamate | + | carbon source |
| 31915 | 17596 | inosine | + | carbon source |
| 31915 | 17240 | itaconate | + | carbon source |
| 31915 | 17716 | lactose | + | carbon source |
| 31915 | 25017 | leucine | + | carbon source |
| 31915 | 37657 | methyl D-glucoside | + | carbon source |
| 31915 | 17268 | myo-inositol | + | carbon source |
| 31915 | 506227 | N-acetylglucosamine | + | carbon source |
| 31915 | 18257 | ornithine | + | carbon source |
| 31915 | 26271 | proline | + | carbon source |
| 31915 | 16634 | raffinose | + | carbon source |
| 31915 | 30911 | sorbitol | + | carbon source |
| 31915 | 30031 | succinate | + | carbon source |
| 31915 | 17992 | sucrose | + | carbon source |
| 31915 | 26986 | threonine | + | carbon source |
| 31915 | 16704 | uridine | + | carbon source |
| 31915 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 31915
- sample type: hot spring
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_56804.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_16384;97_20105;98_25119;99_56804&stattab=map
- Last taxonomy: Planifilum
- 16S sequence: DQ119659
- Sequence Identity:
- Total samples: 8368
- soil counts: 4724
- aquatic counts: 744
- animal counts: 1352
- plant counts: 1548
Sequence information
16S sequences
- @ref: 31915
- description: Planifilum yunnanense strain LA5 16S ribosomal RNA gene, partial sequence
- accession: DQ119659
- length: 1525
- database: nuccore
- NCBI tax ID: 337094
Genome sequences
- @ref: 66792
- description: Planifilum yunnanense KCTC 13052
- accession: 2784132149
- assembly level: draft
- database: img
- NCBI tax ID: 337094
GC content
- @ref: 31915
- GC-content: 56.8
External links
@ref: 31915
culture collection no.: CCTCC AA 206002, KCTC 13052
literature
- topic: Phylogeny
- Pubmed-ID: 17684270
- title: Planifilum yunnanense sp. nov., a thermophilic thermoactinomycete isolated from a hot spring.
- authors: Zhang YX, Dong C, Biao S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64646-0
- year: 2007
- mesh: Actinomycetales/chemistry/*classification/*isolation & purification/physiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Hot Springs/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31915 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28172 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |