Name: Komagataeibacter kombuchae RG3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134216

Type strain:

Species: Komagataeibacter kombuchae

Strain Designation: RG3

Culture col. no.: LMG 23726, MTCC 6913

NCBI tax ID(s): 436 (species)

SI-ID 389481

LMG 23726

Section

Komagataeibacter kombuchae RG3 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plant endophyte.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter kombuchae**
	Full Scientific Name (LPSN)	Komagataeibacter kombuchae (Dutta and Gachhui 2007) Yamada et al. 2013

	Synonym	"Komagatabacter* kombuchae"*
	Synonym	Gluconacetobacter kombuchae

Information on morphological and physiological properties Morphology

[Ref.: #31910]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #31910]	Cell length	2.0-3.0 µm

[Ref.: #31910]	Cell width	0.1-0.2 µm

[Ref.: #31910]	Cell shape	rod-shaped

[Ref.: #31910]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31910]			growth	30-37 °C
[Ref.: #31910]			optimum	33.5 °C

[Ref.: #31910]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31910]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31910]	alanine ChEBI	+	carbon source
[Ref.: #31910]	arabinose ChEBI	+	carbon source
[Ref.: #31910]	butanol ChEBI	+	carbon source
[Ref.: #31910]	glycerol ChEBI	+	carbon source
[Ref.: #31910]	mannitol ChEBI	+	carbon source
[Ref.: #31910]	sorbitol ChEBI	+	carbon source
[Ref.: #31910]	threonine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31910]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31910]	Sample type/isolated from	plant endophyte
* marker position based on {}

Isolation sources categories

#Host	#Other	-
#Host	#Plants	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY688433 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	106
Soil Samples	119
Animal Samples	397
Plant Samples	188
Total Samples	810

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31910]	Komagataeibacter hansenii strain RG3 16S ribosomal RNA gene, partial sequence	AY688433	1442	GenBank	436 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novacetimonas hansenii LMG 23726	GCA_003207935	contig	GenBank	436 tax ID	*
[Ref.: #66792]	Novacetimonas hansenii LMG 23726	GCA_001938755	scaffold	GenBank	436 tax ID	*
[Ref.: #66792]	Komagataeibacter hansenii strain LMG 23726	436.9	wgs	PATRIC	436 tax ID	*
[Ref.: #66792]	Komagataeibacter hansenii strain LMG 23726	436.15	wgs	PATRIC	436 tax ID	*
[Ref.: #66792]	Komagataeibacter hansenii LMG 23726	2849443596	draft	JGI IMG/M	436 tax ID	*

[Ref.: #31910]

GC-content

55.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Komagataeibacter hansenii strain LMG 23726 PATRIC: 436.15
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter hansenii LMG 23726 NCBI: GCA_001938755.1
[Ref.: #69480]	flagellated	no	96.26	no
[Ref.: #69480]	gram-positive	no	96.003	yes
[Ref.: #69480]	anaerobic	no	98.342	yes
[Ref.: #69480]	halophile	no	89.632	no
[Ref.: #69480]	spore-forming	no	94.684	no
[Ref.: #69480]	glucose-util	yes	86.765	no
[Ref.: #69480]	aerobic	yes	81.452	yes
[Ref.: #69480]	thermophile	no	94.55	yes
[Ref.: #69480]	motile	no	81.378	yes
[Ref.: #69480]	glucose-ferment	no	86.651	no

Availability in culture collections External links

[Ref.: #31910]

Culture collection no.

LMG 23726, MTCC 6913

[Ref.: #91811]

SI-ID 389481

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii.	Cleenwerck I, De Wachter M, Gonzalez A, De Vuyst L, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.005157-0	2009	*
Phylogeny	Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea.	Dutta D, Gachhui R	Int J Syst Evol Microbiol	10.1099/ijs.0.64638-0	2007	*
Genetics	Complete Genome Sequence of Komagataeibacter hansenii LMG 23726(T).	Pfeffer S, Santos R, Ebels M, Bordbar D, Brown RM Jr	Genome Announc	10.1128/genomeA.00168-17	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31910

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28167 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91811

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389481.1 )

#28167

IJSEM 353 2007 ( DOI 10.1099/ijs.0.64638-0 , PubMed 17267978 )

* These data were automatically processed and therefore are not curated

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Komagataeibacter hansenii strain LMG 23726

Komagataeibacter hansenii LMG 23726

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