Komagataeibacter kombuchae (LMG 23726, MTCC 6913, RG3)

Name: Komagataeibacter kombuchae (LMG 23726, MTCC 6913, RG3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134216

Type strain

Strain Designation RG3

Culture col. no. LMG 23726 MTCC 6913 RG3

NCBI tax ID(s) 436

Special Collections Literature strains

Links

Komagataeibacter kombuchae RG3 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from plant endophyte.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389481

LMG 23726

@ref 20215

Last LPSN update 2025-12-16 10:02:00

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Komagataeibacter

Species Komagataeibacter kombuchae

Full scientific name Komagataeibacter kombuchae (Dutta and Gachhui 2007) Yamada et al. 2013

Synonyms (2)

"Komagatabacter kombuchae"
Gluconacetobacter kombuchae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31910	negative	2.0-3.0 µm	0.1-0.2 µm	rod-shaped
125439	negative				99.7
125438	negative				96.271

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31910	positive	growth	30-37	mesophilic
31910	positive	optimum	33.5	mesophilic

Physiology and metabolism

Oxygen tolerance

31910

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31910	16449 ChEBI	alanine	+	carbon source
31910	22599 ChEBI	arabinose	+	carbon source
31910	28885 ChEBI	butanol	+	carbon source
31910	17754 ChEBI	glycerol	+	carbon source
31910	29864 ChEBI	mannitol	+	carbon source
31910	30911 ChEBI	sorbitol	+	carbon source
31910	26986 ChEBI	threonine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31910	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Other
#Host	#Plants

Isolation

31910

Sample typeplant endophyte

Taxonmaps

69479

Global distribution of 16S sequence AY688433 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	106
Soil Samples	119
Animal Samples	397
Plant Samples	188
Total Samples	810

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM320793v1 assembly for Novacetimonas hansenii LMG 23726	contig	GCA_003207935	436.15	2849443596	436	67.51
66792	ASM193875v1 assembly for Novacetimonas hansenii LMG 23726	scaffold	GCA_001938755	436.9		436	5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31910	Komagataeibacter hansenii strain RG3 16S ribosomal RNA gene, partial sequence	AY688433	1442		436
124043	Gluconacetobacter kombuchae partial 16S rRNA gene, type strain LMG 23726T	AM999342	1441		436

GC content

31910

GC-content (mol%)55.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Novacetimonas hansenii LMG 23726
NCBI: GCA_001938755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	85.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Komagataeibacter hansenii LMG 23726
NCBI: GCA_001938755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.27	no
125438	anaerobic	anaerobicⓘ	no	87.64	yes
125438	aerobic	aerobicⓘ	yes	69.84	no
125438	spore-forming	spore-formingⓘ	no	85.89	no
125438	thermophilic	thermophileⓘ	no	98.26	yes
125438	flagellated	motile2+ⓘ	no	60.48	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii.	Cleenwerck I, De Wachter M, Gonzalez A, De Vuyst L, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.005157-0	2009
Genetics	Complete Genome Sequence of Komagataeibacter hansenii LMG 23726(T).	Pfeffer S, Santos R, Ebels M, Bordbar D, Brown RM Jr	Genome Announc	10.1128/genomeA.00168-17	2017
Phylogeny	Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea.	Dutta D, Gachhui R	Int J Syst Evol Microbiol	10.1099/ijs.0.64638-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31910	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28167 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Komagataeibacter kombuchae (LMG 23726, MTCC 6913, RG3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003207935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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