Aliidiomarina taiwanensis (JCM 16052, BCRC 80035, NCCB 100321)

Name: Aliidiomarina taiwanensis (JCM 16052, BCRC 80035, NCCB 100321)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133686

Type strain

Strain Designation AIT1

Culture col. no. JCM 16052 BCRC 80035 NCCB 100321 AIT1

NCBI tax ID(s) 946228

Special Collections JCM Literature strains

History W. Y. Shieh AIT1.

Links

Aliidiomarina taiwanensis AIT1 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27652

BCRC 80035,JCM 16052,NCCB 100321

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Idiomarinaceae

Genus Aliidiomarina

Species Aliidiomarina taiwanensis

Full scientific name Aliidiomarina taiwanensis Huang et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30156	negative	1.5-2.8 µm	0.5-0.8 µm	rod-shaped

Pigmentation

30156

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30156	positive	growth	04-45
30156	positive	optimum	30-40
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30156	positive	optimum	7-9
30156	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30156	aerobe
125439	obligate aerobe	90

Spore formation

@ref	Spore formation	Confidence
30156
125439		92.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30156	NaCl	positive	growth	0.5-10 %
30156	NaCl	positive	optimum	1.5-5.0 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30156	30089 ChEBI	acetate	+	carbon source
30156	22599 ChEBI	arabinose	+	carbon source
30156	22653 ChEBI	asparagine	+	carbon source
30156	35391 ChEBI	aspartate	+	carbon source
30156	23652 ChEBI	dextrin	+	carbon source
30156	28757 ChEBI	fructose	+	carbon source
30156	33984 ChEBI	fucose	+	carbon source
30156	28260 ChEBI	galactose	+	carbon source
30156	24265 ChEBI	gluconate	+	carbon source
30156	5417 ChEBI	glucosamine	+	carbon source
30156	17234 ChEBI	glucose	+	carbon source
30156	29987 ChEBI	glutamate	+	carbon source
30156	17754 ChEBI	glycerol	+	carbon source
30156	28087 ChEBI	glycogen	+	carbon source
30156	27570 ChEBI	histidine	+	carbon source
30156	17596 ChEBI	inosine	+	carbon source
30156	24996 ChEBI	lactate	+	carbon source
30156	17306 ChEBI	maltose	+	carbon source
30156	29864 ChEBI	mannitol	+	carbon source
30156	37684 ChEBI	mannose	+	carbon source
30156	17632 ChEBI	nitrate	+	reduction
30156	15361 ChEBI	pyruvate	+	carbon source
30156	33942 ChEBI	ribose	+	carbon source
30156	17822 ChEBI	serine	+	carbon source
30156	17992 ChEBI	sucrose	+	carbon source
30156	27082 ChEBI	trehalose	+	carbon source
30156	16704 ChEBI	uridine	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30156	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30156	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
30156	acid phosphatase	+	3.1.3.2
30156	catalase	+	1.11.1.6
30156	cytochrome oxidase	+	1.9.3.1
30156	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	lipoate biosynthesis	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ubiquinone biosynthesis	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	methylglyoxal degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	purine metabolism	78.72	74 of 94
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	flavin biosynthesis	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	pyrimidine metabolism	71.11	32 of 45
66794	propionate fermentation	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	tyrosine metabolism	64.29	9 of 14
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	arginine metabolism	62.5	15 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	cellulose degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of sugar alcohols	56.25	9 of 16
66794	d-mannose degradation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	urea cycle	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	acetate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	heme metabolism	50	7 of 14
66794	quinate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	isoleucine metabolism	50	4 of 8
66794	butanoate fermentation	50	2 of 4
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	pentose phosphate pathway	45.45	5 of 11
66794	valine metabolism	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	cysteine metabolism	38.89	7 of 18
66794	vitamin B1 metabolism	38.46	5 of 13
66794	oxidative phosphorylation	37.36	34 of 91
66794	ascorbate metabolism	36.36	8 of 22
66794	methionine metabolism	34.62	9 of 26
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	glycogen biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	allantoin degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
30156	seawater
67770	Seawater of Bitou Harbour	New Taipei City	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ537484 (>99% sequence identity) for Aliidiomarina taiwanensis subclade from Microbeatlas

Aquatic Samples	28
Soil Samples	1
Animal Samples	54
Plant Samples
Total Samples	83

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM398701v1 assembly for Aliidiomarina taiwanensis AIT1	contig	GCA_003987015	946228.3	2890094081	946228	69.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30156	Aliidiomarina taiwanensis strain AIT1 16S ribosomal RNA gene, partial sequence	HQ537484	1441		946228

GC content

@ref	GC-content (mol%)	Method
30156	51.5
67770	51.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aliidiomarina taiwanensis AIT1
NCBI: GCA_003987015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.50	no
125439	motility	BacteriaNetⓘ	yes	59.30	no
125439	gram_stain	BacteriaNetⓘ	negative	69.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina taiwanensis gen. nov., sp. nov., isolated from shallow coastal water.	Huang SP, Chang HY, Chen JS, Jean WD, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.030064-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26507	IJSEM 155 2012 ( DOI 10.1099/ijs.0.030064-0 , PubMed 21378139 )
#30156	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26507
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aliidiomarina taiwanensis (JCM 16052, BCRC 80035, NCCB 100321)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003987015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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