Name: Aliidiomarina taiwanensis AIT1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133686

Type strain:

Species: Aliidiomarina taiwanensis

Strain Designation: AIT1

Culture col. no.: JCM 16052, BCRC 80035, NCCB 100321

Strain history: W. Y. Shieh AIT1.

NCBI tax ID(s): 946228 (species)

Section

Aliidiomarina taiwanensis AIT1 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Aliidiomarina*
	Species	**Aliidiomarina taiwanensis**
	Full Scientific Name (LPSN)	Aliidiomarina taiwanensis Huang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30156]	Gram stain	negative

[Ref.: #30156]	Cell length	1.5-2.8 µm

[Ref.: #30156]	Cell width	0.5-0.8 µm

[Ref.: #30156]	Cell shape	rod-shaped

[Ref.: #30156]	Motility	yes

[Ref.: #30156]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30156]	growth	04-45 °C
[Ref.: #30156]	optimum	30-40 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30156]			optimum	7-9
[Ref.: #30156]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30156]

Oxygen tolerance

aerobe

[Ref.: #30156]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30156]		NaCl		growth	0.5-10	%
[Ref.: #30156]		NaCl		optimum	1.5-5.0	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30156]	acetate ChEBI	+	carbon source
[Ref.: #30156]	arabinose ChEBI	+	carbon source
[Ref.: #30156]	asparagine ChEBI	+	carbon source
[Ref.: #30156]	aspartate ChEBI	+	carbon source
[Ref.: #30156]	dextrin ChEBI	+	carbon source
[Ref.: #30156]	fructose ChEBI	+	carbon source
[Ref.: #30156]	fucose ChEBI	+	carbon source
[Ref.: #30156]	galactose ChEBI	+	carbon source
[Ref.: #30156]	gluconate ChEBI	+	carbon source
[Ref.: #30156]	glucosamine ChEBI	+	carbon source
[Ref.: #30156]	glucose ChEBI	+	carbon source
[Ref.: #30156]	glutamate ChEBI	+	carbon source
[Ref.: #30156]	glycerol ChEBI	+	carbon source
[Ref.: #30156]	glycogen ChEBI	+	carbon source
[Ref.: #30156]	histidine ChEBI	+	carbon source
[Ref.: #30156]	inosine ChEBI	+	carbon source
[Ref.: #30156]	lactate ChEBI	+	carbon source
[Ref.: #30156]	maltose ChEBI	+	carbon source
[Ref.: #30156]	mannitol ChEBI	+	carbon source
[Ref.: #30156]	mannose ChEBI	+	carbon source
[Ref.: #30156]	nitrate ChEBI	+	reduction
[Ref.: #30156]	pyruvate ChEBI	+	carbon source
[Ref.: #30156]	ribose ChEBI	+	carbon source
[Ref.: #30156]	serine ChEBI	+	carbon source
[Ref.: #30156]	sucrose ChEBI	+	carbon source
[Ref.: #30156]	trehalose ChEBI	+	carbon source
[Ref.: #30156]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30156]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30156]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #30156]	acid phosphatase	+	3.1.3.2
[Ref.: #30156]	catalase	+	1.11.1.6
[Ref.: #30156]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30156]	gelatinase	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	acetate fermentation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	valine metabolism	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	cysteine metabolism	38.89	7 of 18
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	oxidative phosphorylation	37.36	34 of 91
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	methionine metabolism	34.62	9 of 26
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	glycine metabolism	30	3 of 10
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30156]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater of Bitou Harbour
[Ref.: #67770]	Geographic location (country and/or sea, region)	New Taipei City
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ537484 (>99% sequence identity) for Aliidiomarina taiwanensis subclade from Microbeatlas

Aquatic Samples	28
Soil Samples	1
Animal Samples	54
Plant Samples
Total Samples	83

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30156]	Aliidiomarina taiwanensis strain AIT1 16S ribosomal RNA gene, partial sequence	HQ537484	1441	GenBank	946228 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aliidiomarina taiwanensis AIT1	GCA_003987015	contig	GenBank	946228 tax ID
[Ref.: #66792]	Aliidiomarina taiwanensis AIT1	2890094081	draft	JGI IMG/M	946228 tax ID	*

[Ref.: #30156]	GC-content	51.5 mol%
[Ref.: #67770]	GC-content	51.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30156]

Culture collection no.

JCM 16052, BCRC 80035, NCCB 100321

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina taiwanensis gen. nov., sp. nov., isolated from shallow coastal water.	Huang SP, Chang HY, Chen JS, Jean WD, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.030064-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30156

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26507 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26507

IJSEM 155 2012 ( DOI 10.1099/ijs.0.030064-0 , PubMed 21378139 )

* These data were automatically processed and therefore are not curated

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