Flavobacterium urumqiense (CGMCC 1.9230, NBRC 106480, Sr25)

Name: Flavobacterium urumqiense (CGMCC 1.9230, NBRC 106480, Sr25)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133685

Type strain

Strain Designation Sr25

Culture col. no. CGMCC 1.9230 NBRC 106480 Sr25

NCBI tax ID(s) 935224

Special Collections Literature strains

Links

Flavobacterium urumqiense Sr25 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Glacier.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133535

NBRC 106480

@ref 20215

Last LPSN update 2026-02-09 11:32:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium urumqiense

Full scientific name Flavobacterium urumqiense Dong et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30154	negative	1.5 µm	0.43 µm	rod-shaped
125438	negative				98
125439	negative				99.8

Pigmentation

30154

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30154	positive	growth	2-17
30154	positive	optimum	14.5

Culture pH

@ref	Ability	Type	PH	PH range
30154	positive	optimum	7
30154	positive	growth	6-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30154	aerobe
125439	obligate aerobe	98.3

Spore formation

@ref	Spore formation	Confidence
30154
125438		91.785
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30154	NaCl	positive	growth	0-0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30154	17057 ChEBI	cellobiose	+	carbon source
30154	4853 ChEBI	esculin	+	hydrolysis
30154	17234 ChEBI	glucose	+	carbon source
30154	28087 ChEBI	glycogen	+	carbon source
30154	17306 ChEBI	maltose	+	carbon source
30154	37684 ChEBI	mannose	+	carbon source
30154	17814 ChEBI	salicin	+	carbon source
30154	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30154	acid phosphatase	+	3.1.3.2
30154	alkaline phosphatase	+	3.1.3.1
30154	catalase	+	1.11.1.6
30154	cytochrome oxidase	+	1.9.3.1
30154	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Glacier

Isolation

30154

Sample typeGlacier

Taxonmaps

69479

Global distribution of 16S sequence HQ436467 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	1520
Soil Samples	203
Animal Samples	90
Plant Samples	165
Total Samples	1978

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2617270781 annotated assembly for Flavobacterium urumqiense CGMCC 1.9230	scaffold	GCA_900108015	935224.4	2617270781	935224	71.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30154	Flavobacterium urumqiense strain Sr25 16S ribosomal RNA gene, partial sequence	HQ436467	1392		935224

GC content

30154

GC-content (mol%)35.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium urumqiense CGMCC 1.9230
NCBI: GCA_900108015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	no	75.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium urumqiense CGMCC 1.9230
NCBI: GCA_900108015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	98.39	yes
125438	aerobic	aerobicⓘ	yes	86.53	yes
125438	spore-forming	spore-formingⓘ	no	91.79	yes
125438	thermophilic	thermophileⓘ	no	98.13	no
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Flavobacterium fructosi sp. nov., Flavobacterium xylosi sp. nov. and Flavobacterium zhouii sp. nov., three new members of the genus Flavobacterium.	Han D, Yang LL, Xin YH, Liu Q.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006694	2025
	Flavobacterium algoriphilum sp. nov., Flavobacterium arabinosi sp. nov., Flavobacterium cryoconiti sp. nov., Flavobacterium galactosi sp. nov., Flavobacterium melibiosi sp. nov., and Flavobacterium algoris sp. nov., six novel cold-adapted bacteria isolated from glaciers.	Yang LL, Xin YH, Liu Q.	BMC Microbiol	10.1186/s12866-025-04067-4	2025
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26505	IJSEM 1151 2012 ( DOI 10.1099/ijs.0.030049-0 , PubMed 21724953 )
#30154	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26505
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium urumqiense (CGMCC 1.9230, NBRC 106480, Sr25)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900108015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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