Name: Flavobacterium xueshanense Sr22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133684

Type strain:

Species: Flavobacterium xueshanense

Strain Designation: Sr22

Culture col. no.: CGMCC 1.9227, NBRC 106479

NCBI tax ID(s): 935223 (species)

Section

Flavobacterium xueshanense Sr22 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Glacier.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium xueshanense**
	Full Scientific Name (LPSN)	Flavobacterium xueshanense Dong et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30154]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #30154]	Cell length	1.5 µm

[Ref.: #30154]	Cell width	0.35 µm

[Ref.: #30154]	Cell shape	rod-shaped

[Ref.: #30154]	Motility	no

[Ref.: #30154]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30154]			growth	2-18 °C
[Ref.: #30154]			optimum	14 °C

[Ref.: #30154]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #30154]			optimum	7
[Ref.: #30154]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30154]

Oxygen tolerance

aerobe

[Ref.: #30154]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30154]		NaCl		growth	0-0.5	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30154]		esculin ChEBI	+	hydrolysis
[Ref.: #30154]		maltose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30154]	acid phosphatase	+	3.1.3.2
[Ref.: #30154]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30154]	catalase	+	1.11.1.6
[Ref.: #30154]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30154]	Sample type/isolated from	Glacier
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Glacier

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30154]	Flavobacterium xueshanense strain Sr22 16S ribosomal RNA gene, partial sequence	HQ436466	1390	GenBank	935223 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium xueshanense CGMCC 1.9227	GCA_900112975	scaffold	GenBank	935223 tax ID	*
[Ref.: #66792]	Flavobacterium xueshanense strain CGMCC 1.9227	935223.3	wgs	PATRIC	935223 tax ID	*
[Ref.: #66792]	Flavobacterium xueshanense CGMCC 1.9227	2617270785	draft	JGI IMG/M	935223 tax ID	*

[Ref.: #30154]

GC-content

37.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium xueshanense CGMCC 1.9227 NCBI: GCA_900112975.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium xueshanense CGMCC 1.9227 NCBI: GCA_900112975.1
[Ref.: #69480]	motile	no	91.172	yes
[Ref.: #69480]	flagellated	no	95.048	no
[Ref.: #69480]	gram-positive	no	98.48	yes
[Ref.: #69480]	anaerobic	no	99.286	yes
[Ref.: #69480]	aerobic	yes	92.476	no
[Ref.: #69480]	halophile	no	94.162	yes
[Ref.: #69480]	spore-forming	no	94.233	yes
[Ref.: #69480]	glucose-ferment	no	93.097	no
[Ref.: #69480]	thermophile	no	99.25	no
[Ref.: #69480]	glucose-util	yes	86.455	no

Availability in culture collections External links

[Ref.: #30154]

Culture collection no.

CGMCC 1.9227, NBRC 106479

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30154

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26505 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26505

IJSEM 1151 2012 ( DOI 10.1099/ijs.0.030049-0 , PubMed 21724953 )

* These data were automatically processed and therefore are not curated

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Flavobacterium xueshanense CGMCC 1.9227

Flavobacterium xueshanense CGMCC 1.9227

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