Strain identifier

BacDive ID: 133686

Type strain: Yes

Species: Aliidiomarina taiwanensis

Strain Designation: AIT1

Strain history: W. Y. Shieh AIT1.

NCBI tax ID(s): 946228 (species)

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General

@ref: 30156

BacDive-ID: 133686

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Aliidiomarina taiwanensis AIT1 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 946228
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Y. Shieh AIT1.

doi: 10.13145/bacdive133686.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Idiomarinaceae
  • genus: Aliidiomarina
  • species: Aliidiomarina taiwanensis
  • full scientific name: Aliidiomarina taiwanensis Huang et al. 2012

@ref: 30156

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Idiomarinaceae

genus: Aliidiomarina

species: Aliidiomarina taiwanensis

strain designation: AIT1

type strain: yes

Morphology

cell morphology

  • @ref: 30156
  • gram stain: negative
  • cell length: 1.5-2.8 µm
  • cell width: 0.5-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30156
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30156positivegrowth04-45
30156positiveoptimum30-40
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30156positivegrowth07-09alkaliphile
30156positiveoptimum7-9

Physiology and metabolism

oxygen tolerance

  • @ref: 30156
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30156
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30156NaClpositivegrowth0.5-10 %
30156NaClpositiveoptimum1.5-5.0 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3015630089acetate+carbon source
3015622599arabinose+carbon source
3015622653asparagine+carbon source
3015635391aspartate+carbon source
3015623652dextrin+carbon source
3015628757fructose+carbon source
3015633984fucose+carbon source
3015628260galactose+carbon source
3015624265gluconate+carbon source
301565417glucosamine+carbon source
3015617234glucose+carbon source
3015629987glutamate+carbon source
3015617754glycerol+carbon source
3015628087glycogen+carbon source
3015627570histidine+carbon source
3015617596inosine+carbon source
3015624996lactate+carbon source
3015617306maltose+carbon source
3015629864mannitol+carbon source
3015637684mannose+carbon source
3015615361pyruvate+carbon source
3015633942ribose+carbon source
3015617822serine+carbon source
3015617992sucrose+carbon source
3015627082trehalose+carbon source
3015616704uridine+carbon source
3015617632nitrate+reduction

metabolite production

  • @ref: 30156
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 30156
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
30156acid phosphatase+3.1.3.2
30156catalase+1.11.1.6
30156gelatinase+
30156cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30156seawater
67770Seawater of Bitou HarbourNew Taipei CityTaiwanTWNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_46241.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_197;96_6222;97_7479;98_33456;99_46241&stattab=map
  • Last taxonomy: Aliidiomarina taiwanensis subclade
  • 16S sequence: HQ537484
  • Sequence Identity:
  • Total samples: 83
  • soil counts: 1
  • aquatic counts: 28
  • animal counts: 54

Sequence information

16S sequences

  • @ref: 30156
  • description: Aliidiomarina taiwanensis strain AIT1 16S ribosomal RNA gene, partial sequence
  • accession: HQ537484
  • length: 1441
  • database: nuccore
  • NCBI tax ID: 946228

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aliidiomarina taiwanensis AIT12890094081draftimg946228
67770Aliidiomarina taiwanensis AIT1GCA_003987015contigncbi946228

GC content

@refGC-contentmethod
3015651.5
6777051.5high performance liquid chromatography (HPLC)

External links

@ref: 30156

culture collection no.: JCM 16052, BCRC 80035, NCCB 100321

literature

  • topic: Phylogeny
  • Pubmed-ID: 21378139
  • title: Aliidiomarina taiwanensis gen. nov., sp. nov., isolated from shallow coastal water.
  • authors: Huang SP, Chang HY, Chen JS, Jean WD, Shieh WY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.030064-0
  • year: 2011
  • mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan, Temperature
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30156Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172650728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/