Name: Kribbella deserti SL15-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133358

Type strain:

Species: Kribbella deserti

Strain Designation: SL15-1

Culture col. no.: CGMCC 1.15906, KCTC 39825

NCBI tax ID(s): 1926257 (species)

Section

Kribbella deserti SL15-1 is an aerobe, Gram-positive bacterium that forms irregular colonies and builds an aerial mycelium.

colony-forming
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Kribbellaceae*
	Genus	*Kribbella*
	Species	**Kribbella deserti**
	Full Scientific Name (LPSN)	Kribbella deserti Sun et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25234]	Gram stain	positive

[Ref.: #25234]	Motility	no

[Ref.: #25234]	Colony color	pasty
[Ref.: #25234]	Colony shape	irregular
[Ref.: #25234]	Cultivation medium used	LB

[Ref.: #25234]	Multicellular complex forming ability	yes
[Ref.: #25234]	Multicellular complex name	aerial mycelium
[Ref.: #25234]	Multicellular complex color	white
[Ref.: #25234]	Multicellular complex further description	hyphae fragmented into elongated rod-shaped elements

[Ref.: #25234]	Multicellular complex forming ability	yes
[Ref.: #25234]	Multicellular complex name	vegetative mycelium
[Ref.: #25234]	Multicellular complex color	creamy
[Ref.: #25234]	Multicellular complex further description	hyphae are broadly branched

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25234]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #25234]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25234]			growth	10-40 °C
[Ref.: #25234]			optimum	30 °C

[Ref.: #25234]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25234]			optimum	7
[Ref.: #25234]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25234]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25234]		NaCl		growth	0.0-4.0	%(w/v)
[Ref.: #25234]		NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25234]	adipate ChEBI	-	assimilation
[Ref.: #25234]	aspartate ChEBI	-	assimilation
[Ref.: #25234]	butanol ChEBI	-	assimilation
[Ref.: #25234]	citrate ChEBI	-	assimilation
[Ref.: #25234]	creatine ChEBI	-	assimilation
[Ref.: #25234]	D-fructose ChEBI	+	assimilation
[Ref.: #25234]	D-glucose ChEBI	+	assimilation
[Ref.: #25234]	D-mannose ChEBI	-	assimilation
[Ref.: #25234]	D-xylose ChEBI	-	assimilation
[Ref.: #25234]	decanoate ChEBI	-	assimilation
[Ref.: #25234]	esculin ChEBI	+	hydrolysis
[Ref.: #25234]	ethanol ChEBI	-	assimilation
[Ref.: #25234]	gelatin ChEBI	-	hydrolysis
[Ref.: #25234]	glucose ChEBI	-	fermentation
[Ref.: #25234]	L-arabinose ChEBI	+	assimilation
[Ref.: #25234]	L-arginine ChEBI	-	assimilation
[Ref.: #25234]	L-glutamate ChEBI	-	assimilation
[Ref.: #25234]	L-leucine ChEBI	-	assimilation
[Ref.: #25234]	L-phenylalanine ChEBI	+	assimilation
[Ref.: #25234]	L-proline ChEBI	-	assimilation
[Ref.: #25234]	L-rhamnose ChEBI	+	assimilation
[Ref.: #25234]	L-serine ChEBI	-	assimilation
[Ref.: #25234]	lactose ChEBI	-	assimilation
[Ref.: #25234]	malate ChEBI	+	assimilation
[Ref.: #25234]	malonate ChEBI	-	assimilation
[Ref.: #25234]	maltose ChEBI	-	assimilation
[Ref.: #25234]	mannitol ChEBI	+	assimilation
[Ref.: #25234]	methanol ChEBI	-	assimilation
[Ref.: #25234]	myo-inositol ChEBI	-	assimilation
[Ref.: #25234]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25234]	nitrate ChEBI	-	reduction
[Ref.: #25234]	oxaloacetate ChEBI	-	assimilation
[Ref.: #25234]	phenylacetate ChEBI	-	assimilation
[Ref.: #25234]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25234]	sodium citrate ChEBI	-	assimilation
[Ref.: #25234]	starch ChEBI	+	hydrolysis
[Ref.: #25234]	sucrose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25234]	amoxicillin ChEBI				yes	10	µg (disc)
[Ref.: #25234]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #25234]	bacitracin ChEBI				yes	0.04	Unit (disc)
[Ref.: #25234]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #25234]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #25234]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #25234]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #25234]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #25234]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #25234]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #25234]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #25234]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #25234]	polymyxin ChEBI	yes	300	Unit (disc)
[Ref.: #25234]	rifampicin ChEBI				yes	5	µg (disc)
[Ref.: #25234]	roxithromycin ChEBI	yes	15	µg (disc)
[Ref.: #25234]	spectinomycin ChEBI	yes	100	µg (disc)
[Ref.: #25234]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #25234]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #25234]	trimethoprim ChEBI				yes	5	µg (disc)
[Ref.: #25234]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25234]		indole ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #25234]		glucose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25234]	acid phosphatase	+	3.1.3.2
[Ref.: #25234]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25234]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25234]	alpha-fucosidase	+	3.2.1.51
[Ref.: #25234]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25234]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25234]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25234]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25234]	beta-galactosidase	+	3.2.1.23
[Ref.: #25234]	beta-glucosidase	+	3.2.1.21
[Ref.: #25234]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25234]	catalase	+	1.11.1.6
[Ref.: #25234]	cystine arylamidase	-	3.4.11.3
[Ref.: #25234]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25234]	esterase (C 4)	+
[Ref.: #25234]	esterase Lipase (C 8)	+
[Ref.: #25234]	leucine arylamidase	+	3.4.11.1
[Ref.: #25234]	lipase (C 14)	+
[Ref.: #25234]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25234]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25234]	trypsin	-	3.4.21.4
[Ref.: #25234]	urease	+	3.5.1.5
[Ref.: #25234]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25234]

Fatty acid	Percentage
C15:0 anteiso	26.8
C16:0 iso	20.7
C14:0 iso	11.3
C17:1ω8c	11.3
C15:0 iso	4.2
C17:1 iso ω9c / C16:0 10-methyl	3.6
C17:0	3
C16:1 iso H	2.7
C17:0 anteiso	2.5
C16:1ω7c / C16:1ω6c	1.9
C15:1ω6c	1.9
C17:0 iso	1.6
C16:0 anteiso	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25234]	Sample type/isolated from	desert soil sample from rhizosphere of Ammopiptanthus mongolicus
[Ref.: #25234]	Geographic location (country and/or sea, region)	Hangjin Banner, Ordos, Inner Mongolia, northern China
[Ref.: #25234]	Country	China
[Ref.: #25234]	Country ISO 3 Code	CHN
[Ref.: #25234]	Continent	Asia
[Ref.: #25234]	Geographic location	40.0000°/107.0000°
[Ref.: #25234]	Enrichment culture	LB agar
[Ref.: #25234]	Enrichment culture composition	10 g/l tryptone, 5 g/l yeast extract, 10 g/l NaCl, 20 g/l agar, pH 7.0
[Ref.: #25234]	Enrichment culture duration	2-3 days
[Ref.: #25234]	Enrichment culture temperature	30 ̊C
[Ref.: #25234]	Isolation/enrichment procedure	10-fold dilution method
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25234]	Kribbella sp. strain SL15-1 16S ribosomal RNA gene, partial sequence	KX601688	1475	GenBank	1926257 tax ID

[Ref.: #25234]

GC-content

65.3 mol%

Thermal denaturation, fluorometry

Availability in culture collections External links

[Ref.: #25234]

Culture collection no.

CGMCC 1.15906, KCTC 39825

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella deserti sp. nov., isolated from rhizosphere soil of Ammopiptanthus mongolicus.	Sun JQ, Xu L, Guo Y, Li WL, Shao ZQ, Yang YL, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001697	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25234

J. Q. X. Sun, L.,Guo, Y.,Li, W. L.,Shao, Z. Q.,Yang, Y. L.,Wu, X. L.: Kribbella deserti sp. nov., isolated from rhizosphere soil of Ammopiptanthus mongolicus. IJSEM 67: 692 - 696 2017 ( DOI 10.1099/ijsem.0.001697 , PubMed 27902295 )

* These data were automatically processed and therefore are not curated

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