Strain identifier

BacDive ID: 133358

Type strain: Yes

Species: Kribbella deserti

Strain Designation: SL15-1

NCBI tax ID(s): 1926257 (species)

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General

@ref: 25234

BacDive-ID: 133358

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, colony-forming

description: Kribbella deserti SL15-1 is an aerobe, Gram-positive bacterium that forms irregular colonies and builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 1926257
  • Matching level: species

doi: 10.13145/bacdive133358.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Kribbellaceae
  • genus: Kribbella
  • species: Kribbella deserti
  • full scientific name: Kribbella deserti Sun et al. 2017

@ref: 25234

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Kribbellaceae

genus: Kribbella

species: Kribbella deserti

strain designation: SL15-1

type strain: yes

Morphology

cell morphology

  • @ref: 25234
  • gram stain: positive
  • motility: no

colony morphology

  • @ref: 25234
  • colony color: pasty
  • colony shape: irregular
  • medium used: LB

multicellular morphology

@refforms multicellular complexcomplex namecomplex colorfurther description
25234yesaerial myceliumwhitehyphae fragmented into elongated rod-shaped elements
25234yesvegetative myceliumcreamyhyphae are broadly branched

Culture and growth conditions

culture medium

  • @ref: 25234
  • name: LB (Luria-Bertani) MEDIUM
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25234positivegrowth10-40
25234positiveoptimum30mesophilic

culture pH

@refabilitytypepH
25234positivegrowth6.0-8.0
25234positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25234
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
25234NaClpositivegrowth0.0-4.0 %(w/v)
25234NaCloptimum3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2523417128adipate-assimilation
2523435391aspartate-assimilation
2523428885butanol-assimilation
2523416947citrate-assimilation
2523416919creatine-assimilation
2523416024D-mannose-assimilation
2523465327D-xylose-assimilation
2523427689decanoate-assimilation
2523416236ethanol-assimilation
252345291gelatin-hydrolysis
2523417234glucose-fermentation
2523417268myo-inositol-assimilation
2523416467L-arginine-assimilation
2523429985L-glutamate-assimilation
2523415603L-leucine-assimilation
2523417203L-proline-assimilation
2523417115L-serine-assimilation
2523417716lactose-assimilation
2523415792malonate-assimilation
2523417306maltose-assimilation
2523417790methanol-assimilation
25234506227N-acetylglucosamine-assimilation
2523417632nitrate-reduction
2523416452oxaloacetate-assimilation
2523418401phenylacetate-assimilation
2523432032potassium gluconate-assimilation
2523453258sodium citrate-assimilation
2523415824D-fructose+assimilation
2523417634D-glucose+assimilation
252344853esculin+hydrolysis
2523430849L-arabinose+assimilation
2523417295L-phenylalanine+assimilation
2523462345L-rhamnose+assimilation
2523425115malate+assimilation
2523429864mannitol+assimilation
2523428017starch+hydrolysis
2523417992sucrose+assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
2523428971ampicillinyesyes10 µg (disc)
252342676amoxicillinyesyes10 µg (disc)
2523428669bacitracinyesyes0.04 Unit (disc)
252343393carbenicillinyesyes100 µg (disc)
252343547cephradineyesyes30 µg (disc)
2523417698chloramphenicolyesyes30 µg (disc)
2523448923erythromycinyesyes15 µg (disc)
2523417833gentamicinyesyes10 µg (disc)
252346104kanamycinyesyes30 µg (disc)
252346472lincomycinyesyes2 µg (disc)
2523428368novobiocinyesyes30 µg (disc)
2523418208penicillin gyesyes10 Unit (disc)
2523459062polymyxinyesyes300 Unit (disc)
2523428077rifampicinyesyes5 µg (disc)
2523448844roxithromycinyesyes15 µg (disc)
252349215spectinomycinyesyes100 µg (disc)
2523417076streptomycinyesyes10 µg (disc)
2523445924trimethoprimyesyes5 µg (disc)
2523427902tetracyclineyesyes30 µg (disc)
2523428001vancomycinyesyes30 µg (disc)

metabolite production

  • @ref: 25234
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 25234
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
25234acid phosphatase+3.1.3.2
25234alkaline phosphatase+3.1.3.1
25234alpha-chymotrypsin+3.4.21.1
25234alpha-fucosidase+3.2.1.51
25234alpha-galactosidase+3.2.1.22
25234alpha-glucosidase+3.2.1.20
25234alpha-mannosidase+3.2.1.24
25234arginine dihydrolase-3.5.3.6
25234beta-galactosidase+3.2.1.23
25234beta-glucosidase+3.2.1.21
25234beta-glucuronidase-3.2.1.31
25234catalase+1.11.1.6
25234cystine arylamidase-3.4.11.3
25234cytochrome oxidase-1.9.3.1
25234esterase (C 4)+
25234esterase Lipase (C 8)+
25234leucine arylamidase+3.4.11.1
25234lipase (C 14)+
25234N-acetyl-beta-glucosaminidase+3.2.1.52
25234naphthol-AS-BI-phosphohydrolase-
25234trypsin-3.4.21.4
25234urease+3.5.1.5
25234valine arylamidase-

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25234C15:0 anteiso26.8
    25234C16:0 anteiso1.2
    25234C17:0 anteiso2.5
    25234C15:1ω6c1.9
    25234C16:1ω7c / C16:1ω6c1.9
    25234C17:03
    25234C17:1ω8c11.3
    25234C14:0 iso11.3
    25234C15:0 iso4.2
    25234C16:0 iso20.7
    25234C16:1 iso H2.7
    25234C17:0 iso1.6
    25234C17:1 iso ω9c / C16:0 10-methyl3.6
  • type of FA analysis: whole cell analysis
  • incubation medium: Tryptic soy agar (TSA, Difco)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 1
  • system: MIS MIDI
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 25234
  • sample type: desert soil sample from rhizosphere of Ammopiptanthus mongolicus
  • geographic location: Hangjin Banner, Ordos, Inner Mongolia, northern China
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 40
  • longitude: 107
  • enrichment culture: LB agar
  • enrichment culture composition: 10 g/l tryptone, 5 g/l yeast extract, 10 g/l NaCl, 20 g/l agar, pH 7.0
  • enrichment culture duration: 2-3 days
  • enrichment culture temperature: 30
  • isolation procedure: 10-fold dilution method

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Rhizosphere

Sequence information

16S sequences

  • @ref: 25234
  • description: Kribbella sp. strain SL15-1 16S ribosomal RNA gene, partial sequence
  • accession: KX601688
  • length: 1475
  • database: nuccore
  • NCBI tax ID: 1926257

GC content

  • @ref: 25234
  • GC-content: 65.3
  • method: Thermal denaturation, fluorometry

External links

@ref: 25234

culture collection no.: CGMCC 1.15906, KCTC 39825

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902295
  • title: Kribbella deserti sp. nov., isolated from rhizosphere soil of Ammopiptanthus mongolicus.
  • authors: Sun JQ, Xu L, Guo Y, Li WL, Shao ZQ, Yang YL, Wu XL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001697
  • year: 2017
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fabaceae/*microbiology, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25234J. Q. X. Sun, L.,Guo, Y.,Li, W. L.,Shao, Z. Q.,Yang, Y. L.,Wu, X. L.Kribbella deserti sp. nov., isolated from rhizosphere soil of Ammopiptanthus mongolicus10.1099/ijsem.0.001697IJSEM 67: 692-696 201727902295