Spirosoma swuense (KCTC 52176, JCM 31298, JBM2-3)

Name: Spirosoma swuense (KCTC 52176, JCM 31298, JBM2-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133359

Type strain

Strain Designation JBM2-3

Culture col. no. KCTC 52176 JCM 31298 JBM2-3

NCBI tax ID(s) 1848194

Special Collections JCM KCTC Literature strains

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Spirosoma swuense JBM2-3 is a mesophilic, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from wet soil.

Gram-negative rod-shaped colony-forming mesophilic 16S sequence

Name and taxonomic classification

SI-ID 26730

KCTC 52176,JCM 31298

@ref 20215

Last LPSN update 2025-12-16 10:01:45

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Spirosomataceae

Genus Spirosoma

Species Spirosoma swuense

Full scientific name Spirosoma swuense Joo et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
25232	negative	2.0-2.5 µm	0.5-1.0 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
25232	pale yellow	circular	R2A

Pigmentation

@ref	Production	Name
25232		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
25232	Reasoner's 2A agar (R2A)
25232	Trypticase soy agar
25232	LB (Luria-Bertani) MEDIUM

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25232	positive	growth	25-30	mesophilic
25232	positive	optimum	25	mesophilic
25232	positive	growth	10	psychrophilic
25232	negative	growth	37
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH
25232	positive	optimum	7
25232	positive	growth	6.0-8.0
25232		growth	5
25232		growth	9

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25232	NaCl	positive	growth	0-0.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25232		2-oxogluconate	-	builds acid from
25232	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
25232	17128 ChEBI	adipate	-	assimilation
25232	27613 ChEBI	amygdalin	-	builds acid from
25232	18305 ChEBI	arbutin	-	builds acid from
25232	17057 ChEBI	cellobiose	-	builds acid from
25232	17108 ChEBI	D-arabinose	+	builds acid from
25232	18333 ChEBI	D-arabitol	-	builds acid from
25232	15824 ChEBI	D-fructose	-	builds acid from
25232	28847 ChEBI	D-fucose	-	builds acid from
25232	12936 ChEBI	D-galactose	-	builds acid from
25232	17634 ChEBI	D-glucose	-	assimilation
25232	16899 ChEBI	D-mannitol	-	assimilation
25232	16024 ChEBI	D-mannose	-	assimilation
25232	16024 ChEBI	D-mannose	-	builds acid from
25232	16443 ChEBI	D-tagatose	+	builds acid from
25232	65327 ChEBI	D-xylose	-	builds acid from
25232	27689 ChEBI	decanoate	-	assimilation
25232	17113 ChEBI	erythritol	+	builds acid from
25232	4853 ChEBI	esculin	+	builds acid from
25232	16813 ChEBI	galactitol	-	builds acid from
25232	28066 ChEBI	gentiobiose	-	builds acid from
25232	24265 ChEBI	gluconate	-	builds acid from
25232	24265 ChEBI	gluconate	-	assimilation
25232	17754 ChEBI	glycerol	+	builds acid from
25232	28087 ChEBI	glycogen	-	builds acid from
25232	15443 ChEBI	inulin	+	builds acid from
25232	30849 ChEBI	L-arabinose	+/-	builds acid from
25232	18403 ChEBI	L-arabitol	-	builds acid from
25232	18287 ChEBI	L-fucose	-	builds acid from
25232	62345 ChEBI	L-rhamnose	-	builds acid from
25232	17266 ChEBI	L-sorbose	-	builds acid from
25232	65328 ChEBI	L-xylose	+	builds acid from
25232	25000 ChEBI	lactone	+	builds acid from
25232	25115 ChEBI	malate	-	assimilation
25232	17306 ChEBI	maltose	-	assimilation
25232	17306 ChEBI	maltose	-	builds acid from
25232	29864 ChEBI	mannitol	-	builds acid from
25232	28053 ChEBI	melibiose	-	builds acid from
25232	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
25232	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
25232	37657 ChEBI	methyl D-glucoside	+	builds acid from
25232	17268 ChEBI	myo-inositol	-	builds acid from
25232	506227 ChEBI	N-acetylglucosamine	-	assimilation
25232	506227 ChEBI	N-acetylglucosamine	-	builds acid from
25232	17632 ChEBI	nitrate	-	reduction
25232	18401 ChEBI	phenylacetate	-	assimilation
25232	32032 ChEBI	potassium gluconate	-	assimilation
25232	16634 ChEBI	raffinose	+	builds acid from
25232	15963 ChEBI	ribitol	-	builds acid from
25232	33942 ChEBI	ribose	-	builds acid from
25232	17814 ChEBI	salicin	-	builds acid from
25232	53258 ChEBI	sodium citrate	-	assimilation
25232	30911 ChEBI	sorbitol	-	builds acid from
25232	28017 ChEBI	starch	-	builds acid from
25232	17992 ChEBI	sucrose	-	builds acid from
25232	27082 ChEBI	trehalose	-	builds acid from
25232	32528 ChEBI	turanose	-	builds acid from
25232	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
25232	15347 ChEBI	acetone
25232	16136 ChEBI	hydrogen sulfide
25232	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25232	acid phosphatase	+	3.1.3.2
25232	alkaline phosphatase	+	3.1.3.1
25232	alpha-chymotrypsin	+	3.4.21.1
25232	alpha-fucosidase	-	3.2.1.51
25232	alpha-galactosidase	+	3.2.1.22
25232	alpha-glucosidase	+	3.2.1.20
25232	alpha-mannosidase	+	3.2.1.24
25232	beta-galactosidase	+	3.2.1.23
25232	beta-glucosidase	+	3.2.1.21
25232	beta-glucuronidase	-	3.2.1.31
25232	catalase	-	1.11.1.6
25232	cystine arylamidase	+	3.4.11.3
25232	cytochrome oxidase	+	1.9.3.1
25232	esterase (C 4)	-
25232	esterase Lipase (C 8)	+
25232	gelatinase	-
25232	leucine arylamidase	-	3.4.11.1
25232	lipase (C 14)	+
25232	N-acetyl-beta-glucosaminidase	+	3.2.1.52
25232	naphthol-AS-BI-phosphohydrolase	-
25232	trypsin	+	3.4.21.4
25232	urease	-	3.5.1.5
25232	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
25232	wet soil	Chungju, Chungbuk province, South Korea	Republic of Korea	KOR	Asia	37	127 37/127
67770	Wet soil at Chungju	Chungbuk Province	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KU865688 (>99% sequence identity) for Spirosoma swuense subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	19
Animal Samples	35
Plant Samples	13
Total Samples	72

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25232	Spirosoma swuense strain JBM2-3 16S ribosomal RNA gene, partial sequence	KU865688	1383		1848194

GC content

@ref	GC-content (mol%)	Method
25232	47.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma metallilatum sp. nov., isolated from an automotive air conditioning system.	Kim DU, Lee H, Lee S, Park S, Yoon JH, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002533	2017
Phylogeny	Spirosoma swuense sp. nov., isolated from wet soil.	Joo ES, Kim EB, Jeon SH, Srinivasan S, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001592	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25232	E. S. K. Joo, E. B.,Jeon, S. H.,Srinivasan, S.,Kim, M. K.: Spirosoma swuense sp. nov., isolated from wet soil. IJSEM 67: 532 - 536 2017 ( DOI 10.1099/ijsem.0.001592 , PubMed 27902228 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Spirosoma swuense (KCTC 52176, JCM 31298, JBM2-3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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