Flavobacterium orientale (CGMCC 1.12506, NBRC 109717, SP3)

Name: Flavobacterium orientale (CGMCC 1.12506, NBRC 109717, SP3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133311

Type strain

Strain Designation SP3

Culture col. no. CGMCC 1.12506 NBRC 109717 SP3

NCBI tax ID(s) 1756020

Special Collections Literature strains

Links

Flavobacterium orientale SP3 is an obligate aerobe bacterium that forms circular colonies and was isolated from water of Sayram Lake, in Xinjiang.

colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132645

NBRC 109717

@ref 20215

Last LPSN update 2026-05-29 08:38:03

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium orientale

Full scientific name Flavobacterium orientale Li et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	90.325
125438		93
125438	negative	99

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25148	2.0-3.0 mm	orange	circular	3 days	R2A

Pigmentation

@ref	Production	Name
25148		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
25148	Reasoner's 2A agar (R2A)
25148	NA (Nutrient agar)
25148	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
25148	positive	growth	4-30
25148	positive	optimum	25

Culture pH

@ref	Ability	Type	PH	PH range
25148	positive	optimum	7.0-8.5
25148	positive	growth	6.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25148	obligate aerobe
125439	obligate aerobe	96.965

Spore formation

@ref	Spore formation	Confidence
125438		90.827
125439		99.402

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25148	NaCl		optimum	0.5-1.0 %
25148	NaCl	positive	growth	0-2.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25148	30916 ChEBI	2-oxoglutarate	-	builds acid from
25148	73918 ChEBI	3-O-methyl-D-glucose	-	oxidation
25148	58143 ChEBI	5-dehydro-D-gluconate	+/-	builds acid from
25148	30089 ChEBI	acetate	+	oxidation
25148	13705 ChEBI	acetoacetate	+	oxidation
25148	17925 ChEBI	alpha-D-glucose	+	oxidation
25148	27613 ChEBI	amygdalin	-	builds acid from
25148	18305 ChEBI	arbutin	-	builds acid from
25148	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
25148		casein	+/-	hydrolysis
25148	17057 ChEBI	cellobiose	-	builds acid from
25148	17057 ChEBI	cellobiose	-	oxidation
25148	17029 ChEBI	chitin	-	hydrolysis
25148	16947 ChEBI	citrate	-	assimilation
25148	16947 ChEBI	citrate	-	oxidation
25148	17108 ChEBI	D-arabinose	-	builds acid from
25148	18333 ChEBI	D-arabitol	-	builds acid from
25148	18333 ChEBI	D-arabitol	+	oxidation
25148	15824 ChEBI	D-fructose	-	builds acid from
25148	15824 ChEBI	D-fructose	-	oxidation
25148	28847 ChEBI	D-fucose	-	builds acid from
25148	28847 ChEBI	D-fucose	-	oxidation
25148	12936 ChEBI	D-galactose	-	builds acid from
25148	12936 ChEBI	D-galactose	+/-	oxidation
25148	18024 ChEBI	D-galacturonic acid	+	oxidation
25148	17634 ChEBI	D-glucose	-	builds acid from
25148	14314 ChEBI	D-glucose 6-phosphate	+/-	oxidation
25148	62318 ChEBI	D-lyxose	-	builds acid from
25148	15588 ChEBI	D-malate	-	oxidation
25148	16024 ChEBI	D-mannose	-	builds acid from
25148	16024 ChEBI	D-mannose	-	oxidation
25148	16024 ChEBI	D-mannose	+/-	oxidation
25148	16988 ChEBI	D-ribose	-	builds acid from
25148	16523 ChEBI	D-serine	-	oxidation
25148	17924 ChEBI	D-sorbitol	-	oxidation
25148	16443 ChEBI	D-tagatose	-	builds acid from
25148	65327 ChEBI	D-xylose	-	builds acid from
25148	23652 ChEBI	dextrin	+	oxidation
25148	16991 ChEBI	dna	-	hydrolysis
25148		egg yolk	-	hydrolysis
25148	17113 ChEBI	erythritol	-	builds acid from
25148	4853 ChEBI	esculin	+	hydrolysis
25148	4853 ChEBI	esculin	+	builds acid from
25148	16813 ChEBI	galactitol	-	builds acid from
25148	5291 ChEBI	gelatin	+	hydrolysis
25148	5291 ChEBI	gelatin	+	oxidation
25148	28066 ChEBI	gentiobiose	-	oxidation
25148	28066 ChEBI	gentiobiose	+/-	builds acid from
25148	24265 ChEBI	gluconate	-	builds acid from
25148	17234 ChEBI	glucose	-	fermentation
25148	17754 ChEBI	glycerol	-	builds acid from
25148	17754 ChEBI	glycerol	-	oxidation
25148	70744 ChEBI	glycine-proline	+	oxidation
25148	28087 ChEBI	glycogen	+	builds acid from
25148	13643 ChEBI	glycol	-	builds acid from
25148	17596 ChEBI	inosine	-	oxidation
25148	30849 ChEBI	L-arabinose	-	builds acid from
25148	18403 ChEBI	L-arabitol	-	builds acid from
25148	16467 ChEBI	L-arginine	+	oxidation
25148	29991 ChEBI	L-aspartate	+	oxidation
25148	18287 ChEBI	L-fucose	-	builds acid from
25148	18287 ChEBI	L-fucose	-	oxidation
25148	17464 ChEBI	L-galactonic acid gamma-lactone	+	oxidation
25148	29985 ChEBI	L-glutamate	+	oxidation
25148	15589 ChEBI	L-malate	+	oxidation
25148	62345 ChEBI	L-rhamnose	-	builds acid from
25148	62345 ChEBI	L-rhamnose	-	oxidation
25148	17115 ChEBI	L-serine	+/-	oxidation
25148	17266 ChEBI	L-sorbose	-	builds acid from
25148	65328 ChEBI	L-xylose	-	builds acid from
25148	24996 ChEBI	lactate	-	oxidation
25148	17716 ChEBI	lactose	-	builds acid from
25148	17306 ChEBI	maltose	+	builds acid from
25148	17306 ChEBI	maltose	+	oxidation
25148	6731 ChEBI	melezitose	-	builds acid from
25148	28053 ChEBI	melibiose	-	builds acid from
25148	28053 ChEBI	melibiose	-	oxidation
25148	74611 ChEBI	methyl (R)-lactate	+/-	oxidation
25148	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
25148	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
25148	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
25148	51850 ChEBI	methyl pyruvate	+	oxidation
25148	17268 ChEBI	myo-inositol	-	builds acid from
25148	17268 ChEBI	myo-inositol	-	oxidation
25148	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	oxidation
25148	28037 ChEBI	N-acetylgalactosamine	+	oxidation
25148	506227 ChEBI	N-acetylglucosamine	-	builds acid from
25148	506227 ChEBI	N-acetylglucosamine	-	oxidation
25148	35418 ChEBI	n-acetylneuraminate	+/-	oxidation
25148	17632 ChEBI	nitrate	-	reduction
25148	17309 ChEBI	pectin	+	oxidation
25148	17272 ChEBI	propionate	+	oxidation
25148	16634 ChEBI	raffinose	-	builds acid from
25148	16634 ChEBI	raffinose	-	oxidation
25148	15963 ChEBI	ribitol	-	builds acid from
25148	17814 ChEBI	salicin	-	builds acid from
25148	17814 ChEBI	salicin	-	oxidation
25148	30911 ChEBI	sorbitol	-	builds acid from
25148	17164 ChEBI	stachyose	-	oxidation
25148	28017 ChEBI	starch	+	hydrolysis
25148	28017 ChEBI	starch	+	builds acid from
25148	17992 ChEBI	sucrose	-	builds acid from
25148	17992 ChEBI	sucrose	-	oxidation
25148		synanthrin	-	builds acid from
25148	27082 ChEBI	trehalose	-	builds acid from
25148	27082 ChEBI	trehalose	-	oxidation
25148	32528 ChEBI	turanose	-	builds acid from
25148	32528 ChEBI	turanose	-	oxidation
25148	53424 ChEBI	tween 20	-	hydrolysis
25148	53423 ChEBI	tween 40	+	oxidation
25148	53425 ChEBI	tween 60	+	hydrolysis
25148	53426 ChEBI	tween 80	-	hydrolysis
25148	18186 ChEBI	tyrosine	-	hydrolysis
25148	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
25148	2637	amikacin	30 µg
25148	28971	ampicillin	10 µg
25148	2955	azithromycin	15 µg
25148	3478	cefaclor	30 µg
25148	124991	cefalotin	30 µg
25148	474053	cefazolin	30 µg
25148	3493	cefoperazone	75 µg
25148	204928	cefotaxime	30 µg
25148	3508	ceftazidime	30 µg
25148	29007	ceftriaxone	30 µg
25148	3517	cefuroxime	30 µg
25148	17698	chloramphenicol	30 µg
25148	100241	ciprofloxacin		5 µg
25148	3732	clarithromycin	15 µg
25148	3745	clindamycin	2 µg
25148	50845	doxycycline	30 µg
25148	48923	erythromycin	15 µg
25148	31810	fleroxacin		5 µg
25148	116278	lomefloxacin	10 µg
25148	50694	minocycline	30 µg
25148	7528	netilmycin	30 µg
25148	71415	nitrofurantoin		300 µg
25148	7809	oxacillin		1 µg
25148	18208	penicillin g	10
25148	8232	piperacillin		100 µg
25148	28077	rifampicin	5 µg
25148	9332	sulfamethoxazole		1.25 µg
25148	27902	tetracycline	30 µg
25148	28001	vancomycin	30 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25148	16136 ChEBI	hydrogen sulfide
25148	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25148	acid phosphatase	+	3.1.3.2
25148	alkaline phosphatase	+	3.1.3.1
25148	alpha-chymotrypsin	+	3.4.21.1
25148	alpha-fucosidase	-	3.2.1.51
25148	alpha-galactosidase	-	3.2.1.22
25148	alpha-glucosidase	+/-	3.2.1.20
25148	alpha-mannosidase	-	3.2.1.24
25148	beta-galactosidase	-	3.2.1.23
25148	beta-glucosidase	-	3.2.1.21
25148	beta-glucuronidase	-	3.2.1.31
25148	catalase	+	1.11.1.6
25148	cystine arylamidase	+	3.4.11.3
25148	cytochrome oxidase	+	1.9.3.1
25148	esterase (C 4)	+
25148	esterase Lipase (C 8)	+
25148	leucine arylamidase	+	3.4.11.1
25148	lipase (C 14)	-
25148	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25148	naphthol-AS-BI-phosphohydrolase	+
25148	trypsin	+	3.4.21.4
25148	urease	-	3.5.1.5
25148	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

25148

Fatty acid	Percentage
C15:0 iso	33
C15:1 iso G	19.1
C17:1 iso ω9c / C16:0 10-methyl	10.7
C17:0 iso 3OH	7.9
C15:0 iso 3OH	6.2
C16:1ω7c / C16:1ω6c	3.6
C15:1ω6c	3.5
C17:1ω6c	1.9
C15:0 anteiso	1.8
C16:0 iso 3OH	1.6
C16:0 iso	1.6
iso-C17:1 I / anteiso-C17:1	1.1
C16:1 iso H	1.1
C15:1 anteiso A	0.7
C14:0 iso	0.7
C16:0	0.7
C17:1ω8c	0.6
C13:0 iso	0.5
C17:0 iso	0.4
C17:0 2OH	0.4
C17:1 anteiso ω9c	0.4
C16:0 3OH	0.4
C14:0	0.3
C15:0 2OH	0.3
C18:1ω5c	0.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
25148	water of Sayram Lake, in Xinjiang	Sayram Lake, Xinjiang	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463800v1 assembly for Flavobacterium orientale CGMCC 1.12506	scaffold	GCA_014638005	1756020.3	2996396614	1756020	67.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25148	Flavobacterium orientale strain SP3 16S ribosomal RNA gene, complete sequence	KT985058	1477		1756020

GC content

@ref	GC-content (mol%)	Method
25148	34.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1463800v1 assembly for Flavobacterium orientale CGMCC 1.12506
NCBI: GCA_014638005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.97	no
125439	gram_stain	BacteriaNetⓘ	negative	90.33	no
125439	motility	BacteriaNetⓘ	no	79.10	no
125439	spore_formation	BacteriaNetⓘ	no	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium orientale CGMCC 1.12506
NCBI: GCA_014638005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	96.89	yes
125438	aerobic	aerobicⓘ	yes	82.76	no
125438	spore-forming	spore-formingⓘ	no	90.83	no
125438	thermophilic	thermophileⓘ	no	95.93	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Milk microbiota of Holstein Friesian cattle reared in Lahore: Association with mastitis.	Salman MM, Nawaz M, Yaqub T, Mushtaq MH.	Saudi J Biol Sci	10.1016/j.sjbs.2024.103984	2024
	Consumption of N₂O by Flavobacterium azooxidireducens sp. nov. Isolated from Decomposing Leaf Litter of Phragmites australis (Cav.).	Behrendt U, Spanner T, Augustin J, Zak DH, Horn MA, Kolb S, Ulrich A.	Microorganisms	10.3390/microorganisms10112304	2022
Phylogeny	Flavobacterium orientale sp. nov., isolated from lake water.	Li AH, Liu HC, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001544	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25148	A. H. L. Li, H. C.,Zhou, Y. G.: Flavobacterium orientale sp. nov., isolated from lake water. IJSEM 67: 108 - 112 2017 ( DOI 10.1099/ijsem.0.001544 , PubMed 27902194 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Flavobacterium orientale (CGMCC 1.12506, NBRC 109717, SP3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014638005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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