Name: Pectobacterium parmentieri RNS 08-42-1A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133293

Type strain:

Species: Pectobacterium parmentieri

Culture col. no.: RNS 08-42-1A, CFBP 8475, LMG 29774

NCBI tax ID(s): 1905730 (species)

SI-ID 396079

CFBP 8475

Section

Pectobacterium parmentieri RNS 08-42-1A is a mesophilic, Gram-negative, motile bacterium that was isolated from potato plant expressing blackleg symptoms.

Gram-negative
motile
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Pectobacterium*
	Species	**Pectobacterium parmentieri**
	Full Scientific Name (LPSN)	Pectobacterium parmentieri Khayi et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25067]	Gram stain	negative

[Ref.: #25067]	Motility	yes

[Ref.: #25067]	Colony size	1.0-2.0 mm
[Ref.: #25067]	Incubation period	0.71 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25067]

Culture medium

TY medium

[Ref.: #25067]

Culture medium growth

[Ref.: #25067]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #25067]			optimum	28 °C

[Ref.: #25067]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25067]	3-O-methyl alpha-D-glucopyranoside	-	builds acid from
[Ref.: #25067]	alpha-lactose ChEBI	+	builds acid from
[Ref.: #25067]	D-galactose ChEBI	+	builds acid from
[Ref.: #25067]	malonate ChEBI	-	builds acid from
[Ref.: #25067]	maltose ChEBI	-	builds acid from
[Ref.: #25067]	melibiose ChEBI	+	builds acid from
[Ref.: #25067]	raffinose ChEBI	+	builds acid from

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25067]	Sample type/isolated from	potato plant (cv. Bintje) expressing blackleg symptoms
[Ref.: #25067]	Geographic location (country and/or sea, region)	greenhouse at French National Institute for Agricultural Research (INRA) in Le Rheu
[Ref.: #25067]	Country	France
[Ref.: #25067]	Country ISO 3 Code	FRA
[Ref.: #25067]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #25067]

GC-content

50.4 mol%

Availability in culture collections External links

[Ref.: #25067]

Culture collection no.

RNS 08-42-1A, CFBP 8475, LMG 29774

[Ref.: #91404]

SI-ID 396079

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Pectobacterium punjabense sp. nov., isolated from blackleg symptoms of potato plants in Pakistan.	Sarfraz S, Riaz K, Oulghazi S, Cigna J, Sahi ST, Khan SH, Faure D	Int J Syst Evol Microbiol	10.1099/ijsem.0.003029	2018	*
Phylogeny	Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov.	Khayi S, Cigna J, Chong TM, Quetu-Laurent A, Chan KG, Helias V, Faure D	Int J Syst Evol Microbiol	10.1099/ijsem.0.001524	2016	*
Genetics	High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes.	Zoledowska S, Motyka-Pomagruk A, Sledz W, Mengoni A, Lojkowska E	BMC Genomics	10.1186/s12864-018-5140-9	2018	*
	First Report of Pectobacterium parmentieri Causing Blackleg on Potato in Inner Mongolia, China.	Cao Y, Sun Q, Feng Z, Handique U, Wu J, Li W, Zhang R	Plant Dis	10.1094/PDIS-11-20-2502-PDN	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25067

S. C. Khayi, J.,Chong, T. M.,Quêtu-Laurent, A.,Chan, K. G.,Hélias, V.,Faure, D.: Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov. IJSEM 66: 5379 - 5383 2016 ( DOI 10.1099/ijsem.0.001524 , PubMed 27692046 )

#91404

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396079.1 )

* These data were automatically processed and therefore are not curated

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