Name: Microvirgula curvata L6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133292

Type strain:

Species: Microvirgula curvata

Strain Designation: L6

Culture col. no.: KEMB 2255-471, JCM 31223

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; L6.

NCBI tax ID(s): 1817962 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Microvirgula curvata L6 is a chemoorganoheterotroph, Gram-negative, motile bacterium that was isolated from hydrocarbon- contaminated soils.

Gram-negative
motile
rod-shaped
chemoorganoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Microvirgula*
	Species	**Microvirgula curvata**
	Full Scientific Name (LPSN)	Microvirgula curvata Subhash et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25084]	Gram stain	negative

[Ref.: #25084]	Cell length	1.2-2.5 µm

[Ref.: #25084]	Cell width	0.4-0.6 µm

[Ref.: #25084]	Cell shape	rod-shaped
[Ref.: #25084]	Cell shape	curved-shaped

[Ref.: #25084]	Motility	yes

[Ref.: #25084]	Colony color	cream
[Ref.: #25084]	Cultivation medium used	agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25084]

Culture medium

agar medium

[Ref.: #25084]

Culture medium growth

		Temperature
[Ref.: #25084]	growth	10.0-40.0 °C
[Ref.: #25084]	optimum	27.0-32.0 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #25084]			optimum	6.5-7.5
[Ref.: #25084]			growth	6.1-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25084]

Nutrition type

chemoorganoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25084]		NaCl		growth	0.0-4.5	%(w/v)
[Ref.: #25084]		NaCl		optimum	0.0-0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25084]	ammonium chloride ChEBI	+	nitrogen source
[Ref.: #25084]	ammonium nitrate ChEBI	+	nitrogen source
[Ref.: #25084]	aspartate ChEBI	+	carbon source
[Ref.: #25084]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #25084]	casein	-	hydrolysis
[Ref.: #25084]	cellobiose ChEBI	-	carbon source
[Ref.: #25084]	cellobiose ChEBI	-	builds acid from
[Ref.: #25084]	chitin ChEBI	-	hydrolysis
[Ref.: #25084]	D-alanine ChEBI	+	carbon source
[Ref.: #25084]	D-fructose ChEBI	+	carbon source
[Ref.: #25084]	D-fructose ChEBI	+	builds acid from
[Ref.: #25084]	D-galactose ChEBI	+	carbon source
[Ref.: #25084]	D-galactose ChEBI	+	builds acid from
[Ref.: #25084]	D-glucose ChEBI	+	carbon source
[Ref.: #25084]	D-glucose ChEBI	+	builds acid from
[Ref.: #25084]	D-mannitol ChEBI	+	carbon source
[Ref.: #25084]	D-ribose ChEBI	+	carbon source
[Ref.: #25084]	D-sorbitol ChEBI	-	carbon source
[Ref.: #25084]	dna ChEBI	-	hydrolysis
[Ref.: #25084]	esculin ChEBI	-	hydrolysis
[Ref.: #25084]	ethanol ChEBI	-	carbon source
[Ref.: #25084]	gelatin ChEBI	-	hydrolysis
[Ref.: #25084]	glucose ChEBI	-	fermentation
[Ref.: #25084]	glutamate ChEBI	-	carbon source
[Ref.: #25084]	glycerol ChEBI	-	carbon source
[Ref.: #25084]	hexadecane ChEBI	-	growth
[Ref.: #25084]	L-arabinose ChEBI	+	carbon source
[Ref.: #25084]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25084]	L-arginine ChEBI	+	carbon source
[Ref.: #25084]	L-asparagine ChEBI	-	carbon source
[Ref.: #25084]	L-leucine ChEBI	-	carbon source
[Ref.: #25084]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25084]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #25084]	L-threonine ChEBI	+	carbon source
[Ref.: #25084]	lactose ChEBI	-	carbon source
[Ref.: #25084]	maltose ChEBI	-	carbon source
[Ref.: #25084]	maltose ChEBI	-	builds acid from
[Ref.: #25084]	melibiose ChEBI	+	carbon source
[Ref.: #25084]	melibiose ChEBI	+	builds acid from
[Ref.: #25084]	nitrate ChEBI	+	reduction
[Ref.: #25084]	phenanthrene ChEBI	-	growth
[Ref.: #25084]	potassium nitrate ChEBI	+	nitrogen source
[Ref.: #25084]	pyrene ChEBI	-	growth
[Ref.: #25084]	pyruvate ChEBI	+	carbon source
[Ref.: #25084]	raffinose ChEBI	-	carbon source
[Ref.: #25084]	raffinose ChEBI	-	builds acid from
[Ref.: #25084]	starch ChEBI	-	hydrolysis
[Ref.: #25084]	sucrose ChEBI	+	carbon source
[Ref.: #25084]	sucrose ChEBI	+	builds acid from
[Ref.: #25084]	toluene ChEBI	-	growth
[Ref.: #25084]	trehalose ChEBI	-	carbon source
[Ref.: #25084]	tryptophan ChEBI	-	energy source
[Ref.: #25084]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25084]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25084]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25084]	ampicillin ChEBI	yes	10	µg
[Ref.: #25084]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #25084]	nalidixic acid ChEBI	yes	30	µg
[Ref.: #25084]	penicillin g ChEBI				yes	10	µg
[Ref.: #25084]	rifampicin ChEBI				yes	30	µg

	Metabolite	Production
[Ref.: #25084]	acetoin ChEBI	no
[Ref.: #25084]	hydrogen sulfide ChEBI	no
[Ref.: #25084]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #25084]	acetoin ChEBI	-
[Ref.: #25084]	glucose ChEBI		-
[Ref.: #25084]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #25084]	acid phosphatase	+	3.1.3.2
[Ref.: #25084]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25084]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25084]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25084]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25084]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25084]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25084]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25084]	beta-galactosidase	-	3.2.1.23
[Ref.: #25084]	beta-glucosidase	-	3.2.1.21
[Ref.: #25084]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25084]	catalase	+	1.11.1.6
[Ref.: #25084]	cystine arylamidase	-	3.4.11.3
[Ref.: #25084]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25084]	esterase (C 4)	+
[Ref.: #25084]	esterase Lipase (C 8)	+
[Ref.: #25084]	leucine arylamidase	+	3.4.11.1
[Ref.: #25084]	lipase (C 14)	-
[Ref.: #25084]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25084]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25084]	trypsin	+	3.4.21.4
[Ref.: #25084]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25084]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25084]	Sample type/isolated from	hydrocarbon- contaminated soils
[Ref.: #25084]	Geographic location (country and/or sea, region)	near sea beach
[Ref.: #25084]	Country	Kuwait
[Ref.: #25084]	Country ISO 3 Code	KWT
[Ref.: #25084]	Continent	Asia
[Ref.: #25084]	Geographic location	28.0000°/47.0000°
[Ref.: #25084]	Enrichment culture	agar (1.5 %) medium (pH 7.0)
[Ref.: #25084]	Enrichment culture duration	5 days
[Ref.: #25084]	Enrichment culture temperature	30 ̊C
[Ref.: #25084]	Isolation/enrichment procedure	dilution, streaking on agar plates

[Ref.: #67770]	Sample type/isolated from	Hydrocarbon-contaminated soil
[Ref.: #67770]	Country	Kuwait
[Ref.: #67770]	Country ISO 3 Code	KWT
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT545978 (>99% sequence identity) for Microvirgula from Microbeatlas

Aquatic Samples	2210
Soil Samples	416
Animal Samples	1828
Plant Samples	321
Total Samples	4775

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25084]	Microvirgula sp. L6 partial 16S rRNA gene, strain L6	LT545978	1467	GenBank ENA	1817962 tax ID

[Ref.: #25084]

GC-content

61.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25084]

Culture collection no.

KEMB 2255-471, JCM 31223

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microvirgula curvata sp. nov., isolated from hydrocarbon-contaminated soil, and emended description of the genus Microvirgula.	Subhash Y, Park MJ, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001512	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25084

Y. P. Subhash, M. J.,Lee, S. S.: Microvirgula curvata sp. nov., isolated from hydrocarbon-contaminated soil, and emended description of the genus Microvirgula. IJSEM 66: 5309 - 5313 2016 ( DOI 10.1099/ijsem.0.001512 , PubMed 27666417 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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