Strain identifier
BacDive ID: 133293
Type strain: 
Species: Pectobacterium parmentieri
NCBI tax ID(s): 1905730 (species)
version 8.1 (current version)
General
@ref: 25067
BacDive-ID: 133293
keywords: Bacteria, mesophilic, Gram-negative, motile
description: Pectobacterium parmentieri RNS 08-42-1A is a mesophilic, Gram-negative, motile bacterium that was isolated from potato plant expressing blackleg symptoms.
NCBI tax id
- NCBI tax id: 1905730
- Matching level: species
doi: 10.13145/bacdive133293.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Pectobacteriaceae
- genus: Pectobacterium
- species: Pectobacterium parmentieri
- full scientific name: Pectobacterium parmentieri Khayi et al. 2016
@ref: 25067
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Pectobacteriaceae
genus: Pectobacterium
species: Pectobacterium parmentieri
type strain: yes
Morphology
cell morphology
- @ref: 25067
- gram stain: negative
- motility: yes
colony morphology
- @ref: 25067
- colony size: 1.0-2.0 mm
- incubation period: 0.71 days
Culture and growth conditions
culture medium
- @ref: 25067
- name: TY medium
- growth: yes
- composition: 5 g tryptone l-1, 3 g yeast extract l-1 and agar 1.5 %
culture temp
- @ref: 25067
- growth: positive
- type: optimum
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 25067 | 3-O-methyl alpha-D-glucopyranoside | - | builds acid from | |
| 25067 | malonate | - | builds acid from | 15792 |
| 25067 | maltose | - | builds acid from | 17306 |
| 25067 | D-galactose | + | builds acid from | 12936 |
| 25067 | alpha-lactose | + | builds acid from | 36219 |
| 25067 | melibiose | + | builds acid from | 28053 |
| 25067 | raffinose | + | builds acid from | 16634 |
Isolation, sampling and environmental information
isolation
- @ref: 25067
- sample type: potato plant (cv. Bintje) expressing blackleg symptoms
- geographic location: greenhouse at French National Institute for Agricultural Research (INRA) in Le Rheu
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Sequence information
GC content
- @ref: 25067
- GC-content: 50.4
External links
@ref: 25067
culture collection no.: RNS 08-42-1A, CFBP 8475, LMG 29774
straininfo link
- @ref: 91404
- straininfo: 396079
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 27692046 | Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov. | Khayi S, Cigna J, Chong TM, Quetu-Laurent A, Chan KG, Helias V, Faure D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001524 | 2016 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Nucleic Acid Hybridization, Pectobacterium/*classification, *Phylogeny, Plant Diseases/*microbiology, Solanum tuberosum/*microbiology | |
| Phylogeny | 30239330 | Pectobacterium punjabense sp. nov., isolated from blackleg symptoms of potato plants in Pakistan. | Sarfraz S, Riaz K, Oulghazi S, Cigna J, Sahi ST, Khan SH, Faure D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003029 | 2018 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, Pakistan, Pectobacterium/*classification/genetics/isolation & purification, *Phylogeny, Plant Diseases/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Solanum tuberosum/*microbiology | Transcriptome |
| Genetics | 30326842 | High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes. | Zoledowska S, Motyka-Pomagruk A, Sledz W, Mengoni A, Lojkowska E | BMC Genomics | 10.1186/s12864-018-5140-9 | 2018 | Bacteriophages/physiology, *Genetic Variation, Genome, Bacterial/*genetics, Genomics, Molecular Sequence Annotation, Pectobacterium/*genetics/virology, Phenotype, Plants/*microbiology | Phenotype |
| 33630693 | First Report of Pectobacterium parmentieri Causing Blackleg on Potato in Inner Mongolia, China. | Cao Y, Sun Q, Feng Z, Handique U, Wu J, Li W, Zhang R | Plant Dis | 10.1094/PDIS-11-20-2502-PDN | 2021 |
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 25067 | S. C. Khayi, J.,Chong, T. M.,Quêtu-Laurent, A.,Chan, K. G.,Hélias, V.,Faure, D. | Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov | 10.1099/ijsem.0.001524 | IJSEM 66: 5379-5383 2016 | 27692046 |
| 91404 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396079.1 |